Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq139 300 3e-76 seq213 197 3e-45 >seq139 Length=234430 Score = 300 bits (332), Expect = 3e-76 Identities = 557/809 (69%), Gaps = 38/809 (5%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| || || ||||||| ||| ||| ||| |||||||| | | | || |||||| Sbjct 200057 CTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAA-ATTTTTGAA 199999 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| |||||||| ||| ||||||||||||| ||| || ||||||||| Sbjct 199998 CAACCTAAACATTCTAATAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTT 199939 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | |||| | ||| || || |||| | ||| Sbjct 199938 GAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCTTTCAACTTCA 199879 Query 49752 acagcttgtttaattatcataattatatta---ttttttgataatttatatt-taatatg 49807 ||||||| || ||| ||| || || | | || || || ||||| || ||||| Sbjct 199878 ACAGCTTCTT---TTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAA 199822 Query 49808 attcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTC 49867 | |||||||| ||| |||||| |||||||| || || || ||| || | ||| Sbjct 199821 CT----ATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTC 199766 Query 49868 ATTACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA 49926 ||| ||||| || | ||| || ||| | | | ||||||| |||||| || | | Sbjct 199765 ATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGT-TTTTTAAACCAAAAAATAGCACAGA 199707 Query 49927 AACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACA 49986 |||||| | ||| | |||||| || ||||| ||| ||||| |||||| || ||| | Sbjct 199706 AACTACCACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAA--A 199649 Query 49987 TTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTA 50046 | ||||| | ||| |||||| ||| |||||| |||||| || || | | |||| Sbjct 199648 TGAATTTGT-ATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTA 199590 Query 50047 TATTTTCTATAGCTTTAAAT-AATTCA-----tttttttCATNNNNNNNNNNNNNNNNNN 50100 ||||||| ||||| | |||| |||| | | |||||||| Sbjct 199589 TATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCAT------CTTTTATATAAT 199536 Query 50101 NNNNNATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAAT 50160 || | |||| ||| |||| ||||||| | ||||| |||||||||||||| | Sbjct 199535 TGTCTATAAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGT 199476 Query 50161 AAAATTGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACT----AAATTC 50216 |||||| | | ||||||| | ||||| || || ||| || ||| ||||| Sbjct 199475 AAAATTTTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAAT--TT--ACTGGCCAAATTT 199420 Query 50217 TCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTT 50276 || |||| ||||||||| ||||| || |||||||| || | |||||||||||| ||| Sbjct 199419 TCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTT 199360 Query 50277 TCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATT 50336 ||||| || ||||| ||||| || || | ||| |||||||||||| |||||| | Sbjct 199359 TCATTCTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCT 199300 Query 50337 GTCCAAAATGATGCTACGGATTTTTTATA 50365 ||||||||||||||| | | ||||||||| Sbjct 199299 GTCCAAAATGATGCTTCTGCTTTTTTATA 199271 >seq213 Length=18882 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | ||||| ||||| |||||||||| ||||| ||| |||||||| || Sbjct 815 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 874 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| | |||| || |||||||| || ||||| |||||||| |||||||| ||||| Sbjct 875 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 934 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| |||||||| ||||| |||||||| || | ||||| |||||||| Sbjct 935 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 994 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || ||||| || || || || ||||| | ||||||||||||| Sbjct 995 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 1043 Score = 188 bits (208), Expect = 1e-42 Identities = 181/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||| ||||| | ||||| ||||| |||||||||| ||||| ||| |||||||| Sbjct 350 AAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC 409 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||||||| | |||| || |||||||| || || || |||||||| || ||||| || Sbjct 410 CGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGG 469 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| |||||||| ||||| |||||||| |||| ||| || ||||| Sbjct 470 TGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTC 529 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| |||| || ||||| || || || || ||||| | |||||||||||| Sbjct 530 TACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 581 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||||| ||||| || | |||| |||||| ||| |||||||| ||| Sbjct 585 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGAT 644 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||||| | |||| ||||||||||| || ||||| |||||||| |||||||| ||||| Sbjct 645 AATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 704 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| ||||| |||||||| || | ||| || || || || Sbjct 705 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACA 764 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || ||||| || || ||||| ||||| | |||||||||||| Sbjct 765 TCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 812 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | ||||| ||||||||||| |||| || || ||| |||||||| | Sbjct 1046 ACCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAA 1105 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| |||| |||||||| || || ||||| || ||||| || ||||||||||| Sbjct 1106 TAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGG 1165 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||| ||||| || ||||| |||||||| || | ||| || || || || Sbjct 1166 TATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATCCGATGACTCAAC 1225 Query 192489 TTCTAGAGTAATGGTTTTACC 192509 || | || || |||||||| Sbjct 1226 ATCCAAGGTGATCGTTTTACC 1246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984455857473900