Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq139 293 4e-74 seq213 179 7e-40 seq100 113 8e-20 >seq139 Length=234430 Score = 293 bits (324), Expect = 4e-74 Identities = 575/850 (68%), Gaps = 30/850 (4%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 |||| || || |||| ||| |||||| ||||||||||||||||||| || || |||| Sbjct 200102 ATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTA 200043 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 ||| ||| ||| ||| |||||||| | | | || |||||| | | | | ||| | | Sbjct 200042 AATCCATCCAATTAAAAGGATTTTTTGCA-AAAAAAATTTTTGAACAACCTAAACATTCT 199984 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| ||| || |||||||||| ||| || |||||||| ||||||| || | | Sbjct 199983 AATAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAATTCATCCCAATT 199924 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | |||| | ||| || || |||| | ||| ||||||| || || Sbjct 199923 AAGTCACAAGGTAGAGATTCACATATGAAAGACCTTTCAACTTCAACAGCTTCTT---TT 199867 Query 39069 atcataattatatta---ttttttgataatttatatt-taatatgattcgcatataGTAA 39124 | ||| || || | | || || || ||||| || ||||| | ||||| || Sbjct 199866 ACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAACT----ATATATTAG 199811 Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| |||||| |||||||| ||||| || ||| || | |||||| ||||| || | Sbjct 199810 ACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGGTAAG 199751 Query 39185 TCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 39243 ||| || ||| | | | ||||||| |||||| || | ||||||| | ||| | Sbjct 199750 TCCATGTAATTTGTTTTGT-TTTTTAAACCAAAAAATAGCACAGAAACTACCACTAAACA 199692 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATC 39301 |||||| || ||||| ||| ||||| |||||| || ||| || |||| |||||| Sbjct 199691 GTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAA--ATGAATTTGTATCATT 199634 Query 39302 TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361 | ||||| ||| |||||| |||||| || || | | ||||||||||| ||||| Sbjct 199633 T---ATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGC 199577 Query 39362 TTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATA 39421 | |||||| | | ||| Sbjct 199576 ATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTATAAGTAAACTATA 199517 Query 39422 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA 39481 |||| ||||||| | ||||| |||||||||||||| ||||||| | ||||||| Sbjct 199516 TGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGT 199457 Query 39482 ATACTGAACTTCGGAAAAGAATCGTTCAACT----AAATTCTCAGATACAATACCATCAG 39537 | ||||| || || ||| || ||| ||||| || |||| ||||||||| Sbjct 199456 AATTTGAACCTCTCTTAAAAAT--TT--ACTGGCCAAATTTTCTAATACTATACCATCAC 199401 Query 39538 ATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 39597 ||||| || |||||||| |||| |||||||||||| |||||||| || ||||| |||| Sbjct 199400 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTAATTTTT 199341 Query 39598 CCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGG 39657 | || || | ||| |||||||||||| |||||| ||||||||| |||||| | | Sbjct 199340 CAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTG 199281 Query 39658 ATTTTTTATA 39667 ||||||||| Sbjct 199280 CTTTTTTATA 199271 >seq213 Length=18882 Score = 179 bits (198), Expect = 7e-40 Identities = 179/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||| ||||| | |||||| ||||| |||||||||| ||||| || |||||||| Sbjct 350 AAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC 409 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||||| | || | | || || |||||||| || || || |||||||| || || || || Sbjct 410 CGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGG 469 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| |||||||| |||||||| ||||| |||||||| |||||||| || ||||| Sbjct 470 TGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTC 529 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||| |||| || ||||| || || || || ||||| | ||||||||||||| Sbjct 530 TACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 581 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | |||||| ||||| |||||||||| ||||| || |||||||| || Sbjct 815 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 874 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | | || || |||||||| || ||||| |||||||| ||||| || ||||| Sbjct 875 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 934 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| |||||||| ||||| |||||||| || || ||||| |||||||| Sbjct 935 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 994 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || || || || ||||| | |||||||||||| Sbjct 995 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 1043 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | |||||| ||||| || | |||| |||||| || |||||||| ||| Sbjct 585 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGAT 644 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | | || ||||||||||| || ||||| |||||||| ||||| || ||||| Sbjct 645 AATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 704 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| |||||||| ||||| |||||||| || ||||| || || || || Sbjct 705 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACA 764 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | || ||||| || || ||||| ||||| | ||||||||||||| Sbjct 765 TCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 812 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | |||||| ||||||||||| |||| || || || |||||||| | Sbjct 1046 ACCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAA 1105 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | || |||||||| || || ||||| || ||||| || || |||||||| Sbjct 1106 TAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGG 1165 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||| ||||| || ||||| |||||||| || ||||| || || || || Sbjct 1166 TATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATCCGATGACTCAAC 1225 Query 172022 TTCTAGAGTAATGGTTTTACC 172042 || | || || |||||||| Sbjct 1226 ATCCAAGGTGATCGTTTTACC 1246 >seq100 Length=495214 Score = 113 bits (124), Expect = 8e-20 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCC-AATTGTTTACCAGCAAAAATTAATCT 171946 ||||| ||||| ||||| | ||| ||| | |||||||| || |||||||||||||| Sbjct 295280 ATATTGTAATCATTTAAAGTTT-TTCCACATTCTAATTGTTTTCCCGCAAAAATTAATCT 295222 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||| ||| | || ||| |||| ||||| || ||||| ||| | ||| || || Sbjct 295221 TTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCTTTAATATTTTCAATTGT 295162 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||| ||||| || || || | ||| ||||| || |||||||||| | |||||| || Sbjct 295161 ATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAATGTTTTTACGAATATTTG 295102 Query 172067 CATTTT 172072 |||||| Sbjct 295101 CATTTT 295096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905114344621200