Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq79 201 3e-46 seq112 138 3e-27 seq37 96.9 1e-14 seq159 95.1 4e-14 >seq79 Length=130352 Score = 201 bits (222), Expect = 3e-46 Identities = 358/514 (70%), Gaps = 9/514 (2%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || |||| | || | ||||| |||||||||||| ||| || || || Sbjct 112151 CTATCAAATCTTCCAGGTCTTGTAATGGCTGGATCTAATATATCGATTCTATTAGTACCT 112210 Query 288910 GCCAATACAACAA---TA-GATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTG 288965 || ||||| | | || |||| | | | | |||||||||||| | ||||| Sbjct 112211 GCTAATACTATTACTTTATGATTTGATGTA-TGAAATCCATCCATTTCAACCAGCATTTG 112269 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCttt 289024 ||| | ||| | ||| |||||||||||| |||| || | ||| | | | || ||| Sbjct 112270 ATTTAATGTATTTTCTCTTTCATCATTTCCTCCTCCTGCAAAACCACCTTTTGATC-TTT 112328 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 || | ||||||||||| |||||||| || || || | | | || |||| || ||| || Sbjct 112329 TTCTCCCAACAGCATCTATTTCGTCTATAAATATAATAGAAGGTGAATGTTTTCTTGCCT 112388 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||||||||| || | |||| |||| |||||| | | ||||| ||| ||| Sbjct 112389 GTGCAAATAATTCTCTAACCCTAGATGGACCAATTCCAACAAATACTTCTATAAAATCAC 112448 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | || | || |||| |||||||||||| |||||||| ||| | || || |||| Sbjct 112449 TACCACTTATGTTAAAAAATGGTACATTTGCTTCTCCTGCTACGGCCTTAGCTAGTAGTG 112508 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | || ||||| ||||||| || ||||| | || || |||| |||||| || | Sbjct 112509 TTTTTCCTGTACCAGGTGCACCACATAATAATGCCCCTTTAGGTATTTTTGCACCTAAAT 112568 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | |||||| || | |||||||| || |||| |||| || ||| | |||||| | Sbjct 112569 TTTCATATTTAGTAGAATTTTTTAAAAAATCAACAAATTCCATAATTTCTTCTTTTGCTT 112628 Query 289325 -CATCACATCCTGCTACATCAGCAAAAGTAATAT 289357 ||| | || || ||| |||||||||| || Sbjct 112629 GTTTCATA-CCAGCAACACTTGCAAAAGTAACAT 112661 >seq112 Length=225903 Score = 138 bits (152), Expect = 3e-27 Identities = 743/1165 (64%), Gaps = 38/1165 (3%) Strand=Plus/Minus Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATG---CCTGTAATTGCT 155455 ||||||||| ||||| || || || ||||| || | ||| | ||| ||||| ||| | Sbjct 221699 AAATGTGTCAGCTAATCCTTGTACACCAATTCCTATTGGTCTATGTCTCCTGT--TTGAT 221642 Query 155456 CCTGCTTGTCTTC-TTGTTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---G 155511 | || |||| || || ||| |||| |||||||| || | ||||||| | Sbjct 221641 CT--CTCAGCTTCCTTAACAGGATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCG 221584 Query 155512 TAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAA---TGTTTTATCCTCAT 155568 ||| | | || || | || |||||| | | | ||| | |||| || | Sbjct 221583 TAATAATT---TTTGTAATTTCATATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGT 221527 Query 155569 TTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGC 155628 |||||| ||| | | ||||||| || | ||||| || ||| || | | | || | Sbjct 221526 CTACAAATTTACATAAAGCAATAGATGCTAAGTTACAAACAGCAA-CTTCATCTGGT-GA 221469 Query 155629 TGTAT--TCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTG 155686 ||||| |||| || |||||||| || ||| || || || || |||||||| || || Sbjct 221468 TGTATATTCTATTATTTCACAGCATAGATTACTACATTTAATTGTACCTAAATTTTTTTG 221409 Query 155687 GTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 ||||||||| ||||| | ||| ||||| | |||||||| ||||| || ||||| Sbjct 221408 ATTAGATTTAGCATTACATGAATCTTTGTACAACATGTATGGTACACCTGTTTCAATCTG 221349 Query 155747 TGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTC 155806 | | ||| | ||| | || | || |||| || || | || || Sbjct 221348 ACTTTGTAAAATAGCAAACCATAAATCTTGAGC--TAATACAGTTTTTTTTCCTAAATTT 221291 Query 155807 -CGACT-CATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTC 155862 | || |||| ||||||||| | ||| | || ||||| | ||||||| | Sbjct 221290 TCTTCTTCATACTTTTCATATA-ATTTTTCAA-ATTCTTCACCCCATGTTTCACTCAAAC 221233 Query 155863 CAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAA 155922 | || || | || || || | | | |||| ||||||| | | || | | ||||| Sbjct 221232 CTGGACATTCATTTGGACACATTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAA 221173 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982 ||| ||| |||||| |||||| || | || || || || | || || | || | Sbjct 221172 ATAAATCTGGAACCCAAACAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCAT 221113 Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042 |||| || | | |||| ||||| || || | ||| ||| || | ||| | | Sbjct 221112 GATTTTTTCTCAAATCTAGAAATTCAAATATGTCTGAATGCCATGGTTCAATATATACTG 221053 Query 156043 CAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099 |||| || || || || || ||| ||||||||||| | ||| || | || || | Sbjct 221052 CAAATGATCCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAA 220993 Query 156100 CACCTAGCATAGGAA-TAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCA 156158 | | || ||| || | |||| || || ||| | ||||| ||||| | |||| ||| Sbjct 220992 CTCTTAACATTGGTACTAAT-CCGTTTGAAATACCATTAGTTCCTCTTATATATGAATTC 220934 Query 156159 GATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCG 156218 | || | || || | || ||||||||||||| |||| || ||| Sbjct 220933 TGTCCACGTATATCTTGTACTGCTACACCAATACCACCTGCAGTTTTACTTATCAAAGCA 220874 Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278 |||| |||| || | ||||| |||||||||||||| ||| ||| | || | | | Sbjct 220873 CATTGTTTTAATGTTTCAAAAATTCCTTCAATAGAATCTGCTTTCATACACAGCAAAAAA 220814 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 || || | ||| |||| |||||| || | || |||| ||| || |||||||| || Sbjct 220813 CAAGATGACATTTGTGGTCTTGGTGTCCCTGAATTAAATAATGTTGGCGTTGCATGTGTA 220754 Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAAT--CTTCTCAAGATTAGACCCGT 156396 ||||| || | ||||| || || || || |||| || || |||| | | Sbjct 220753 AAATATTTTTGTGACATCAGATGATAGGTTTC--TAATGCTTTTTCTAGATCATCTAAAT 220696 Query 156397 GAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAA 156456 | |||| || || || ||||| || |||||| || | |||| || || || Sbjct 220695 GTATACCAATTGATACTCTCATAATCAAATGCTGTGGTCTTTCTATGATTTTATTATTAA 220636 Query 156457 TTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCAC 156516 | || | | |||| | ||| | |||||||| || || ||||| | |||||||| Sbjct 220635 TACGTAATAAATATGATCTTTCTAACGTTTTAAAACCAAAGTAATCGTAGTTAAAATCAC 220576 Query 156517 GGTTGTAATCAATCATTTCATCTAA 156541 | | ||||||||| || || ||| Sbjct 220575 GTGTATAATCAATCTCTTTATTTAA 220551 >seq37 Length=214198 Score = 96.9 bits (106), Expect = 1e-14 Identities = 260/393 (66%), Gaps = 11/393 (3%) Strand=Plus/Plus Query 380962 AATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACC 381021 ||||| | ||| ||| | | ||||| | | | || ||||||||| | ||| Sbjct 54731 AATGTGAGAATATGGGAAGCAAATGGAACTAGAGAATTTTTAGATAATAGAAAACTATTT 54790 Query 381022 AATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||| || | | |||| | ||||||||||| || ||||| |||||||||||| || Sbjct 54791 GATAGAGAGGTAAATGATTTAGGTCCTATTTATGGTTTTCAATGGAGACATTTTGGAGCT 54850 Query 381082 GATTATGATAAT-TGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATAT 381140 || ||| ||| ||| || | ||||| ||| || | || ||| ||||| |||| Sbjct 54851 GAATATACAAATATGT-ATGATAATTATGAAAATAAAGGAATTGATCAGCTAAAAAATAT 54909 Query 381141 CATAGACCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTG 381200 ||| | | |||||||| ||| ||| || | | | | | ||| || ||| || Sbjct 54910 TATAAATTTGATAAAAAAT---GAACCAACAAGTAGAAG---AATTATTTTGTGTGCATG 54963 Query 381201 GAATCCTTGCCAGATTAATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAA 381260 |||| | | || | ||||| ||||||||||| |||||||||||||| || | Sbjct 54964 GAATGTAAAGGATCTGGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTA 55023 Query 381261 TGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGGTCT 381320 | ||| | ||| || ||| ||| | ||||| || ||||| | ||||| Sbjct 55024 TATTTTCGATGG---GAAATTATCATGTATCATGTATCAACGATCTTGTGATTTAGGTCT 55080 Query 381321 GGGTGTTCCATTCAATATTGCTTCGTATTCTAT 381353 |||||||| ||||||||||| || || || || Sbjct 55081 TGGTGTTCCCTTCAATATTGCCTCCTACTCAAT 55113 >seq159 Length=254741 Score = 95.1 bits (104), Expect = 4e-14 Identities = 374/579 (65%), Gaps = 17/579 (3%) Strand=Plus/Minus Query 288679 GCTAAAATAACCGCCTCATTCGCCATATTTTCAATATCCGCTCCTGAAAATCCAGATGTT 288738 ||||| ||| || ||||| | | |||||| | ||| || ||||||||||||| |||| Sbjct 9968 GCTAATATAGTTGCTTCATTTACTACATTTTCCAAATCAGCACCTGAAAATCCAGGTGTT 9909 Query 288739 AGAATTGCGATTTCATCTAAATCGGTATTAGGCATTACAT----TTTTACGCTTTAAATG 288794 | | || ||| || | ||| | | | ||| || ||||| ||| ||| Sbjct 9908 AACCTAGCTATTCTTTCAATATCT---TCTGCCTTTAAATCGCTTTTTATTTTTTTAATA 9852 Query 288795 GACGTCT--AAAATTTTACGACGACCAGATACATCAGGCAAACCCACCCGCACCCTCCTA 288852 | ||| | |||| | | ||| |||||| || ||| || || | || Sbjct 9851 TAAATCTCTAGAATTCTTTTTCTTCCATTTACATCTGGTAAAGGAACATAAACAATTCTG 9792 Query 288853 TCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCC 288912 ||||| ||||| | | | ||| || ||||| ||||| ||| || ||||| | Sbjct 9791 TCAAATCTACCTGGTCTAAGTAAAGCACTATCTAACGTATCGATTCTATTCGTTGCACCT 9732 Query 288913 AATACAACAATAGATTCGGT-TTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAG 288971 | || | ||| | | || ||||| |||||||||||| | ||| | |||||| || Sbjct 9731 ATCACCATTATATGTACAGTATTGCT-AAATCCATCCATTTCTACTAATAATTGATTTAG 9673 Query 288972 TGTTTGTTCCCTTTCA-TCATTTGAACCTCTTGAA-TCACCC-GAATCGCTCCttttttt 289028 ||||| || ||| || | | || | | || | | || ||| || || || Sbjct 9672 CGTTTGATCATGTTCTCTCTGTCCAGCCCCATTAACTGATCCAGAA---CTTCTCTTCCC 9616 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | ||| |||||||| ||||| |||| | | || | | | ||| ||| ||| Sbjct 9615 TCCTATAGCGTCAATTTCATCAATAAAAACAATTGATGGTGCAACTGATCTTGCATGTGC 9556 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| | ||||| | |||||| | || ||||| ||||||| |||||||| | Sbjct 9555 AAATAACTGTCTTATTCTTTTTGCTCCTTGTCCTACATATATTTCTATAAATTCAGGTCC 9496 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | ||| ||| ||||| ||||| |||||||||||| || | | || || Sbjct 9495 AGAAGTATAAATATATGGAACATTGGCTTCTGTTGCTACTGCCCTTGCTAACATAGTTTT 9436 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 ||| | |||||||||||| ||| | ||| ||||| || Sbjct 9435 ACCCGATCCAGGTGGTCCTACTAGCAAAACACCCTTAGG 9397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471781506433018