Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq213 214 4e-50 seq100 145 1e-29 >seq213 Length=18882 Score = 214 bits (236), Expect = 4e-50 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || || | ||||||||||| ||||| |||||||| || |||||||| ||| Sbjct 585 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGAT 644 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || ||||| | ||||||||| ||||| |||| |||||||||||| || || Sbjct 645 AATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 704 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || |||||||| ||||||||||| | || || Sbjct 705 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACA 764 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || ||||| ||||| || || || || |||||||||||| Sbjct 765 TCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 812 Score = 210 bits (232), Expect = 4e-49 Identities = 184/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || || | |||||||| | ||||||||||||||| || |||||||| || Sbjct 353 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 412 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || || |||| ||||||||| || || |||| |||||| ||||| || || Sbjct 413 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGG 472 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||||||||||||||| || || |||||||| ||||| ||||| | |||||| Sbjct 473 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTAC 532 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| |||||||| || || || |||||||||||| Sbjct 533 ATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 581 Score = 210 bits (232), Expect = 4e-49 Identities = 184/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || || | |||||||| | ||||||||||||||| || |||||||| || Sbjct 815 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 874 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || || |||| ||||||||| ||||| |||| |||||||||||| || || Sbjct 875 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 934 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||||||||||||||| || || |||||||| ||||| || || | |||||| Sbjct 935 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 994 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || ||||| || || ||||||||||||||| Sbjct 995 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 1043 Score = 152 bits (168), Expect = 1e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || || | ||||| || | |||||||| || || || |||||||| | Sbjct 1046 ACCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAA 1105 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || ||||| | ||| ||||| ||||| || | |||||| ||||| || || Sbjct 1106 TAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGG 1165 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||||||| ||||| || || |||||||| ||||||||||| | || || Sbjct 1166 TATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATCCGATGACTCAAC 1225 Query 82763 TTCCAAAGTTATCGTCTTGCCT 82784 ||||| || ||||| || ||| Sbjct 1226 ATCCAAGGTGATCGTTTTACCT 1247 >seq100 Length=495214 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || |||| |||||| ||||||||||| ||||| |||||| || | || | || |||| Sbjct 295307 ACCAAGTTCAGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCT 295248 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||||||| ||||| |||| |||||||| || | || ||| |||||||||| ||| Sbjct 295247 AATTGTTTTCCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGA 295188 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || |||||||| | ||||||||| ||||| | ||| || || | | || || || Sbjct 295187 ATTTTTGCTTTAATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTT 295128 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | || || ||||| ||||| |||||| || Sbjct 295127 CCCCTTAATGTTTTTACGAATATTTGCATTTTT 295095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981803122528846