Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq112 286 8e-72 seq139 187 6e-42 seq37 105 2e-17 seq3 102 2e-16 seq118 100 7e-16 seq70 96.9 8e-15 >seq112 Length=225903 Score = 286 bits (316), Expect = 8e-72 Identities = 618/911 (68%), Gaps = 25/911 (3%) Strand=Plus/Plus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || |||||||| ||||| | | | || || |||||||| ||||| Sbjct 220552 TAAATAAAGAGATTGATTATACACGTGATTTTAACTACGATTACTTTGGTTTTAAAACGT 220611 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | ||| | | |||||| | ||| | ||| | ||||| ||| | || || || || Sbjct 220612 TAGAAAGATCATATTTATTACGTATTAATAATAAAATCATAGAAAGACCACAGCATTTGA 220671 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT---AAAGCTGTTATTGAATGTT 110439 || | | || | |||||||| ||| | ||||| | ||||| ||| ||| | Sbjct 220672 TTATGAGAGTATCAATTGGTATACATTTAGATGATCTAGAAAAAGCA-TTA--GAAACCT 220728 Query 110440 ATGATGTATTAAGTAAAAAGAAAGCTATT---CATGCTACTCCTACCCTATTTAACGCAG 110496 || || | | || | || ||| | || ||||| || || || ||||||| ||| Sbjct 220729 ATCATCTGAT--GTCACAA-AAATATTTTACACATGCAACGCCAACATTATTTAATTCAG 220785 Query 110497 GAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTG 110556 | || || |||| || | ||||| ||| | || | || || | |||||||||| Sbjct 220786 GGACACCAAGACCACAAATGTCATCTTGTTTTTTGCTGTGTATGAAAGCAGATTCTATTG 220845 Query 110557 AAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTG 110616 |||| |||| ||| | | ||| || |||| | || ||||| | || || |||| Sbjct 220846 AAGGAATTTTTGAAACATTAAAACAATGTGCTTTGATAAGTAAAACTGCAGGTGGTATTG 220905 Query 110617 GTATTCACGTTCATGATATTCGCTCAAAAGGAG-CAAATATCGCAACAGCGAAGGGTGCT 110675 || | || || ||||| || | | || | || |||| | | | || ||| | Sbjct 220906 GTGTAGCAGTACAAGATATACG-TGGACAGAATTCATATATAAGAGGAACTAATGGTATT 220964 Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| ||| | || |||||||||||||| || ||||| || || | |||||| ||||| Sbjct 220965 TCAAACGGATTAGTACCAATGTTAAGAGTTTTTAACGATACAGCTAGATATGTAGATCAA 221024 Query 110736 GGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 ||||| || ||||| || |||||||| | ||| | ||||| ||||||||||| ||| Sbjct 221025 GGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATATTGAACCATGGCATTCAGACATA 221084 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 |||||||| |||| | | |||||||| || |||||| |||||| | |||||| Sbjct 221085 TTTGAATTTCTAGATTTGAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTAGAGATTTA 221144 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 |||||||| | ||| || |||||||||| |||||| | ||| | |||||| | ||| Sbjct 221145 TTTTATGCTGTTTGGGTTCCAGATTTATTTATGAAAAGAGTTAAGGAAAATAAAAATTGG 221204 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 || | |||||||| || | ||| ||| | ||| || || |||| |||||| Sbjct 221205 ACTTTAATGTGTCCAAATGAATGTCCAGGTTTGAGTGAAACATGGGGTGAAGAATTTGAA 221264 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAA 111029 | | || ||||| |||||| ||||| || || | ||| ||| | ||||||| Sbjct 221265 AAATTATATGAAAAGTATGAAGAAGAA---AATTTAGGAAAAAAAACTGTATTAGCTCAA 221321 Query 111030 GAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTAT 111089 || | ||||| || | || || ||||||| || || || || ||||| Sbjct 221322 GATTTATGGTTTGCTATTTTACAAAGTCAGATTGAAACAGGTGTACCATACATGTTGTAC 221381 Query 111090 AAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA 111148 ||||| |||| |||| ||||||||||||| |||||||| |||||||| | |||||| Sbjct 221382 AAAGATTCAT-GTAATGCTAAATCTAATCAAAAAAATTTAGGTACAATTAAATGTAGTAA 221440 Query 111149 TTTGTGCTGTG 111159 | | ||||||| Sbjct 221441 TCTATGCTGTG 221451 >seq139 Length=234430 Score = 187 bits (206), Expect = 6e-42 Identities = 565/862 (66%), Gaps = 13/862 (2%) Strand=Plus/Plus Query 131438 CCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGGACT 131497 |||||| | ||| |||||||| ||| | ||||| ||| | | || | || ||||| Sbjct 199241 CCAATTTTATATCCCGATGTTTGGGATTTTTATAAAAAAGCAGAAGCATCATTTTGGACA 199300 Query 131498 GTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGAATGAA 131557 | |||||| || ||| | | | ||| | | |||| |||||||||| ||||||| Sbjct 199301 GCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAAATTAAATGAGAATGAA 199360 Query 131558 AAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAA 131617 || ||||| || | || | ||||| || || | |||||||| || || | ||| Sbjct 199361 AAGCATTTTATTAAACATGTATTAGCATTTTTTGCAGCTAGTGATGGTATAGTATTAGAA 199420 Query 131618 AATCTTGTTATTAATTTCATTCAAGAAA--TTGATATTCCTGAAGTAACATCGTTCTACA 131675 ||| | | | ||| || || |||| | || | ||| | |||| | | || ||| Sbjct 199421 AATTTGGCCAGTAAATT--TTTAAGAGAGGTTCAAATTACAGAAGCTAAAAAATTTTACT 199478 Query 131676 CATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGAGAGTC 131735 |||||||| || || ||| ||| ||| || | ||| ||| | || || | | Sbjct 199479 CATTTCAAATAGCAGTGGAAAATATACATTCAGAAACATATAGTTTACTTATAGACAATT 199538 Query 131736 TTGTTAAAAATGAAGATGATAAAAATAAATT-ATTTGATGCTGTAAATAAATTTCCTGCA 131794 | | ||| ||||| | || | |||||| |||| ||||| | | || | || ||| Sbjct 199539 ATATAAAAGATGAAAAAGA-ACGTTTAAATTTATTTCATGCTATTGAAAATATACCAGCA 199597 Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854 |||| || |||||| ||||| |||||||| | ||||| | | ||| | Sbjct 199598 GTTAAGAATAAAGCACTTTGGGCAGCAAAATGGAT---AAATGATACAAATTCATTTGCA 199654 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 |||| ||||||| ||| ||||||||||||||| | ||| ||| |||||||||| Sbjct 199655 GAAAGAATTGTAGCAAATGCATGTGTTGAAGGTATACTGTTTAGTGGTAGTTTCTGTGCT 199714 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 || |||||| |||| || | | | |||||| | || |||| || | || Sbjct 199715 ATTTTTTGGTTTAAAAAACAAAACAAATTACATGGACTTACCTTTAGCAATGAACTAATT 199774 Query 131975 TCGAGAGATGAAGCATTGCATACTGAATTT-GCTATATTAATCTATAGAAAATTTGCTGA 132033 |||||||||| ||| ||||| || ||| || | |||| ||||| ||| | | Sbjct 199775 AGTAGAGATGAAGGATTACATACAGATTTTAACTGT-CTAATATATAGTTTATTAGAAAA 199833 Query 132034 TAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGA 132093 |||||| ||| | | ||||| | || ||| ||||| ||||| | || |||| Sbjct 199834 TAAACTACCAGAAGAAGTTGTTAAAAATATTGTAAAAGAAGCTGTTGAAGTTGA-AAGGT 199892 Query 132094 GTTT-ATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGG 132152 ||| || ||| || | ||||| | || |||||||||||| | | ||| Sbjct 199893 CTTTCATATGTGAATCTCTACCTTGTGACTTAATTGGGATGAATTCAAGATTAATGTCTC 199952 Query 132153 AGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATA 132212 |||| |||||||| || || ||||| ||| | | | || | ||| || |||| | Sbjct 199953 AGTATATTGAATTTGTAGCAGATCGATTATTAGAATGTTTAGGTTGTTCAAAAATTTTTT 200012 Query 132213 ACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCT 132272 | |||| || | || |||||||| | |||||| || |||| ||||| ||||| | Sbjct 200013 TTGCAAAAAATCCTTTTAATTGGATGGATTTAATTTCTCTACAAGGAAAAACAAACTTTT 200072 Query 132273 TCGAAAGTCGTGTATCTGAGTA 132294 | |||| ||||| |||| || Sbjct 200073 TTGAAAAACGTGTTGCTGATTA 200094 >seq37 Length=214198 Score = 105 bits (116), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 58939 ATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACATT 58998 ||||||||| ||||||||||||||||| || | |||||||||||| | ||| ||||||| Sbjct 55024 ATAAAATTGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCCAGATCCTTTACATT 54965 Query 58999 CCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAATG 59058 |||||||| |||||||| | | | || |||||||| || | | | | || Sbjct 54964 CCATGCACACAAAATAATTCTTCTACTTGTTGGTTCATTTTTTATCAAATTTATAATATT 54905 Query 59059 TTTTATTTGGTCAAATCCATTAGTATATTCAGTATTGGCAT-CA-----ATGTATTTATC 59112 ||||| || |||| ||| | ||| |||| ||| ||| || | |||| | | Sbjct 54904 TTTTAGCTGATCAATTCCTT---TATTTTCATAATTATCATACATATTTGTATATTCAGC 54848 Query 59113 TCCCCAATAACGCCATTGAAAACCATATACAGGTCC 59148 ||| ||| | ||||||||||||||| | ||| || Sbjct 54847 TCCAAAATGTCTCCATTGAAAACCATAAATAGGACC 54812 >seq3 Length=177388 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 72301 AAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTTCCATCAAAGTTC 72360 ||||| |||||||||||| |||| |||||||||||| || | ||||||| |||| Sbjct 112622 AAATTTTCATCTTCAAAATTTTCCCCATATATACTTAAACTTCCACTTCCATTGTAGTTA 112681 Query 72361 ACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATGGAAAG 72409 |||| ||||||||| || | |||||| | |||||||||||||| |||| Sbjct 112682 ACAAAATCACCTCCCTGTATCATAAACTCTTTAATTACTCTATGAAAAG 112730 >seq118 Length=124309 Score = 100 bits (110), Expect = 7e-16 Identities = 120/162 (74%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || || ||| | ||||||||||| ||| ||||| || ||| |||||||| ||| Sbjct 53172 GTACTTTTTAATCGACAACCATCACTTCATCGTATGTCAATTATGTGTCATAAAGCTAAA 53231 Query 305390 GTATT---ATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCG 305446 || | || | | || |||||||| || | | ||| |||| | ||||||||||| Sbjct 53232 ATAATGAAATATAAA---ACTTTTCGATTTAACGAATGTGTTTGTTCACCTTATAATGCT 53288 Query 305447 GATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||| |||||||||||| | ||| | || ||| || Sbjct 53289 GATTTTGATGGTGATGAAATGAATCTTCATATTCCACAAACA 53330 >seq70 Length=548507 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| || | |||| | || || ||||||||||| || || || |||||| Sbjct 215979 AGACATATGACAGATGAGGATTATATACTATTTAATAGGCAACCTTCTCTACACAAAATG 215920 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA--A 305423 ||| |||| ||||||| || ||||| | | || |||||| ||||| || | Sbjct 215919 AGTATTATGGGACATAAAGCTAAGATATTACCATATTCAACTTTTCGACTAAATTTAGCA 215860 Query 305424 GTG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 || | | | ||||||||||| |||||||||||||| ||||||||| | ||| || | Sbjct 215859 GTAACATCT---CCTTATAATGCCGATTTTGATGGAGACGAAATGAATCTACATCTAGCA 215803 Query 305483 CAATC 305487 ||||| Sbjct 215802 CAATC 215798 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 167685 CATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAAT 167744 |||||||| ||||||||||| | ||| || | || ||| ||||| ||||||||| Sbjct 400278 CATTCATCATAAAAACCATATACAGTTGTTATTTGTCTACTTTCATGATTACCTCTTAAT 400219 Query 167745 AAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAA-AATAATAACAAAATTGTTTCTA- 167802 || ||||||| ||| | || ||| ||||| | || |||||||| Sbjct 400218 AATGTTATGTTTTTTGGAAATAATAATTT-TAACAATAATAAATATTCAAATGTTTCTAC 400160 Query 167803 ATGATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATT 167851 | ||| || |||||||||||||||||||||||||||||||| | ||| Sbjct 400159 ACTATTATAC-CCTCTATCAACATAATCACCTAAAAATATATAATCATT 400112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186783695641354