Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq213 104 2e-17 >seq213 Length=18882 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | ||| || || | ||||| || ||||| || || ||||| || || | Sbjct 816 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 875 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| |||||||| || || | || |||||||| || Sbjct 876 AATGTTCTTCCA-TCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 934 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||||||||| || || || | ||||| || ||||| || Sbjct 935 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 994 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || || || ||||| || || || |||||| Sbjct 995 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 1043 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | ||| ||||| | ||| || || || || || || ||||| || || | Sbjct 584 TCCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGA 643 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || | | | | || || | ||||| |||||||| || || | || |||||||| | Sbjct 644 TAATGTTCTTCCA-TCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTG 702 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| || || || | || || || || || | Sbjct 703 GAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAA 762 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | || ||||| || || ||||| ||||| ||||| || |||||| Sbjct 763 CATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | ||| || || | ||||| || ||||| || || ||||| || || | Sbjct 354 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 413 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||||| ||||| || || || | ||||||||||| || Sbjct 414 AATGTTCTTCCA-TCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGG 472 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||||||||| || || || | || || || ||||| || Sbjct 473 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTAC 532 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || ||||| || || || || ||||| ||||| || |||||| Sbjct 533 ATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505386308343280