Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq112 437 1e-117 seq139 269 4e-67 >seq112 Length=225903 Score = 437 bits (484), Expect = 1e-117 Identities = 1024/1520 (67%), Gaps = 45/1520 (3%) Strand=Plus/Minus Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 ||||||||| || || |||||||| | ||||||||| ||||| | ||||| | ||| || Sbjct 222041 GTAAATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGA 221982 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 |||||| ||||||||||| | | ||| ||| || || |||||| || | ||||| || Sbjct 221981 TGCAGTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTC 221922 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTA-CAAC------ATTCCAAAGATCGT 68920 ||| || | ||||||| ||| | || || |||| |||||| | ||| Sbjct 221921 TTTAAGTTCATTCCAATTCCAGTATT----TGTTATCAACTTTGATATTCCACATATCAA 221866 Query 68921 ATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTT 68980 | || ||||| || | || || || | ||| | |||||| || | || Sbjct 221865 ACTGAAGAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTT 221806 Query 68981 CAGCTAGTTC-ACA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTT 69038 ||||| ||| | | || | ||||||||| | || || || ||||| ||||| | || Sbjct 221805 TAGCTAATTCCATAGACATT--TCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTT 221748 Query 69039 ATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGC 69098 ||| | |||| |||||| ||| | ||||| |||||| ||||||| || || Sbjct 221747 ATTTAATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGC 221688 Query 69099 CAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGG 69158 ||||| || || ||||| || || |||||||||||| | ||||| || |||||||| Sbjct 221687 TAATCCTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTT 221628 Query 69159 AATAGGATAATAATTAATATCTATAATTTTATTAAGATTTC--GGACTACTACTTTAACC 69216 || |||||||||||| | || |||||||| | | ||||| | | || | || | Sbjct 221627 AACAGGATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTA-- 221570 Query 69217 ACGTCCTTTAGTTTGAGAAAATCAAA---TCGTCCATCTATA---ACAAACATATTCAGT 69270 | || | || ||| ||||| ||| | | ||| | ||||| || | Sbjct 221569 ATTTCATATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAA 221510 Query 69271 GCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCT 69330 || | |||||||| |||||||| || || |||| | || ||||| |||||| || Sbjct 221509 GCAATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCA 221450 Query 69331 GTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAG 69390 ||||||||||||||||| || || || | ||||| |||||| || ||||| Sbjct 221449 CAGCATAGATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACAT 221390 Query 69391 GCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTC 69450 | || ||||| | || | || ||| |||||||||||| || | ||||| | Sbjct 221389 GAATCTTTGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAAC 221330 Query 69451 CAAACGACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTA 69507 || | | ||| || ||| || || | | || |||| |||||| | | | Sbjct 221329 CATAAATCTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCA 221273 Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567 |||| ||| ||||| || ||||| ||| ||| || |||||||||||||||||| Sbjct 221272 TATAATTTTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACAC 221213 Query 69568 ATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 || || | ||| | || |||||||||| ||||||||||| ||| |||| ||||| | Sbjct 221212 ATTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACA 221153 Query 69628 GCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGA 69687 || ||| | |||||| | ||| |||||| || || ||||||| | | ||| ||| Sbjct 221152 GCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGA 221093 Query 69688 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTT 69746 || || | || || |||||||||||||| | ||||| || |||| ||| || ||| Sbjct 221092 AATTCAAATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGA-TCCTTTTCTTTT 221034 Query 69747 ATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG-AATAA 69805 ||| || ||||||| ||||| || || | ||| | ||||| | ||| || | ||| Sbjct 221033 TCCTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAA 220974 Query 69806 TACCATTAGATTTACCATTTGTTC--CAGAAATATAACTTCCTCTTGCGCGAATAT-TAC 69862 | || || || ||||||| |||| | | |||| | ||| | | || |||| | Sbjct 220973 T-CCGTTTGAAATACCATTAGTTCCTCTTATATATGAATTC--TGTCCACGTATATCTTG 220917 Query 69863 TAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGT 69922 || | | || ||| || || ||||| ||||| || | |||||| |||| ||||| | Sbjct 220916 TACT-GCTACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTT 220858 Query 69923 CATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGAT 69982 || | || || || || ||| || |||| || | |||||| |||||||| | Sbjct 220857 CAAAAATTCCTTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTG-T 220799 Query 69983 GATGTATAGT-TCCC-GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | | | | || |||| | |||||||||||| || | ||| || || || |||||| || Sbjct 220798 GGTCT-TGGTGTCCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGA 220740 Query 70041 AAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGAC 70100 | ||||| || ||||| | ||| ||||| ||| ||| || || || | || Sbjct 220739 CATCAGATGATAGGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATAC 220680 Query 70101 ACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGA 70160 | ||| | || |||||| |||| ||||| |||||||||| || || | ||||| Sbjct 220679 TCTCATAATCAAATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGA 220620 Query 70161 TTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAAC 70220 | |||| | |||||||| ||||| || | ||| ||| || | | ||| ||| | Sbjct 220619 TCTTTCTAACGTTTTAAAACCAAAGTAATCGTAGTTAAAATCACGTGTATAATCAATCTC 220560 Query 70221 AGAATTTAGTTTATCCTTAT 70240 ||||| | ||||||||| Sbjct 220559 TTTATTTAATCTATCCTTAT 220540 >seq139 Length=234430 Score = 269 bits (298), Expect = 4e-67 Identities = 597/886 (67%), Gaps = 26/886 (3%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || ||| || || ||| |||| ||||| || ||||| || ||||| |||| Sbjct 200113 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 200054 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 | || || ||||| ||| ||| ||||| ||||| | | ||||| | | || Sbjct 200053 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACC 199994 Query 39433 TAA---TTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 ||| |||| ||| |||| |||||| |||||||| || || ||| | | | Sbjct 199993 TAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGA 199937 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTA-GAAACTCTTTTTCGATGTCTA 39548 |||||| || || | | | ||||||| || || |||| | ||| | | || | Sbjct 199936 ATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCTTT-CAACTTCAA 199878 Query 39549 CGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGC---AATAAATGTT 39605 | || ||| ||| || | | || || || || || || |||||| Sbjct 199877 CAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAAC--- 199821 Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 || | |||| ||| || || ||||| || |||||||||||||||| ||| || Sbjct 199820 TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGC 199761 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 ||| || |||||| | | | | ||||| | |||||| || ||| ||| | Sbjct 199760 TAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTAC 199701 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA---ACTTG 39782 || ||| | || ||||| || |||| ||| |||| ||| ||| | | | ||| Sbjct 199700 CACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTG 199641 Query 39783 TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 ||||||| |||||| || ||||||| ||||| ||||| || || || ||| Sbjct 199640 TATCATT---TATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTT 199584 Query 39843 CTATAGCATTAAAGAGAT---AATGTTTTTCATCACTATCTTTAACATATGTATCTATTA 39899 | ||||||| ||| | || || ||| || ||| ||||| | ||| | ||||| | Sbjct 199583 CAATAGCATGAAATAAATTTAAACGTTCTTTTTCA---TCTTTTATATAATTGTCTATAA 199527 Query 39900 ACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATC 39959 | |||||| |||||||||| || ||||| | || || |||||| |||||| | Sbjct 199526 GTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTT 199467 Query 39960 TTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTC 40019 | ||||| |||||||| |||||| ||||| | ||||||||||| ||||| | Sbjct 199466 TAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATAC 199407 Query 40020 CATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA 40079 |||||||||| ||||||||||| ||||||||||||||||||| ||||||| | | Sbjct 199406 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTA 199347 Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 |||| | | || || | ||| |||||| ||||| |||||||||||||||||| || | Sbjct 199346 ATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATG 199287 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGG 40185 | ||||| ||||| || | | ||| | ||| ||||| ||||| Sbjct 199286 CTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGG 199241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892365706960