Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1007 176 4e-39 seq139 163 2e-35 seq37 150 1e-31 >seq1007 Length=209773 Score = 176 bits (194), Expect = 4e-39 Identities = 379/561 (68%), Gaps = 23/561 (4%) Strand=Plus/Minus Query 19319 TTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTG 19378 |||||||| | || |||||||||| |||||| | | ||||| || || ||| | Sbjct 187466 TTAAACAACTAGGTATTAAACATGTTAAGGGACTTATCTTGTATGGTCCTCCAGGTACAG 187407 Query 19379 GAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAA 19435 ||||||||||||| || ||| | | ||||| ||| | ||| | |||| |||| Sbjct 187406 GAAAAACATTAATCGCAAGACAGATAGGTAAAACATTAAATGCAAGAGAACCA---AAAA 187350 Query 19436 TTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGAC 19495 || | ||||| || ||||| ||||||||||||||||| || || ||||||||| | ||| Sbjct 187349 TTATTAATGGACCAGAAATATTAAATAAATATGTAGGACAGTCAGAAGAAAATATTCGAA 187290 Query 19496 GTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT---TTGC 19552 ||| ||| || |||||| |||| | |||| || | | |||| |||| || | Sbjct 187289 ATTTATTTAAAGATGCTGAAATAGAATATAAAC--AGAGTGGGGAAAA-TTCTTTATTAC 187233 Query 19553 ACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TTCTG 19603 | ||||| |||||||| ||| | || || || |||| |||||||| ||| Sbjct 187232 ATATTATTATACTAGACGAAATTGATGCTATATGTAGACAAAGAGGAAATTCCTTTTCCA 187173 Query 19604 GTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 || | ||||||| |||| | | | || ||||| | || || ||| | || || || | Sbjct 187172 GTAGTACTGGAGTAAATGATAGTATAGTAAATCAGTTACTTTCCAAAATTGATGGAGTGA 187113 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCG 19723 | | |||||||| | |||| || ||||| ||||| | || | || || | Sbjct 187112 ATAGTTTAAATAATATACTTCTTATCGGTATGACAAATAGGATAGATCTTATTGATGAAG 187053 Query 19724 CCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT-TACCCGATGAATGT 19782 | || ||| |||| || |||| ||| || | || |||| || || | || || | Sbjct 187052 CATTGTTAAGACCTGGAAGGTTTGAATTACATATTGAAA-TATCTCTTCCAAATAAGGAA 186994 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 ||| | | |||| ||||| ||||||||| || ||| || ||| ||| |||| | Sbjct 186993 GGAAGAATTCAAATATTAAAAATACATACAAAAAATATGAGAAAAAGTAATAAATTAAGT 186934 Query 19843 GACGATGTAGATCTAGAAGAA 19863 ||||| || |||||||| Sbjct 186933 CCAGATGTTAATATAGAAGAA 186913 >seq139 Length=234430 Score = 163 bits (180), Expect = 2e-35 Identities = 571/876 (65%), Gaps = 33/876 (4%) Strand=Plus/Plus Query 43712 CCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACA 43771 |||||| ||||| || | ||| | | || ||||||||| | || |||||||||||| Sbjct 199241 CCAATTTTATATCCCGATGTTTGGGATTTTTATAAAAAAGCAGAAGCATCATTTTGGACA 199300 Query 43772 GCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTG---CATTAAAACCACAA 43828 || |||||| | ||||| | | || ||| | ||| ||| |||||| | Sbjct 199301 GCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATT---TTGAAAAATTAAATGAGAAT 199357 Query 43829 GAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 ||||| |||||||| | | | || || || |||||||| || || || || ||||| Sbjct 199358 GAAAAGCATTTTATTAAACAT--GTATTAGCATTTTTTGCAGCTAGTGATGGTATAGTAT 199415 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 |||||||||| ||| ||| ||| |||||| | ||||||| | |||| Sbjct 199416 TAGAAAATTTGGCCAGTAAATTTTTAAGAGAGGTTCAAATTACAGAAGCTAAAAAATTTT 199475 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 | |||||||| || | |||||||| ||||| |||| || ||| | || ||||| | Sbjct 199476 ACTCATTTCAAATAGCAGTGGAAAATATACATTCAGAAACATATAGTTTACTTATAGACA 199535 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAGTACCT 44065 || || ||||||| | || | | | | || ||| |||| || |||| |||| Sbjct 199536 ATTATATAAAAGATGAAAAAGA-ACGTTTAAATTTATTTCATGCTATTGAAAATATACCA 199594 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 || |||| |||||||| ||||| |||||||||||| | |||| |||| | Sbjct 199595 GCAGTTAAGAATAAAGCACTTTGGGCAGCAAAATGGATAAATGATACAAATTCATTTGCA 199654 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG-GC 44184 ||| || |||| || |||| ||| ||||| || | ||| || | |||| | || Sbjct 199655 GAAAGAATTGTAGCAAATGCATGTGTTGAAGGTATACTGTTTAGTGG-TAGTTTCTGTGC 199713 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 || |||||||| || |||| | | | ||| | || ||| ||||| |||| Sbjct 199714 TATTTTTTGGTTTAAAAAACAAAACAAATTACATGGACTTACCTTTAGCAATGAACTAAT 199773 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGA 44304 ||| | |||||||| |||||| |||||| || | || | | | || ||| Sbjct 199774 TAGTAGAGATGAAGGATTACATACAGATTTTAACTGTCTAATATATAG---TTTATTAGA 199830 Query 44305 CGATAAGCCTTCATGTAAGA--CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAA 44362 |||| | || |||| ||| | ||||||| ||| || || | | ||| Sbjct 199831 AAATAAACTACCA--GAAGAAGTTGTTAAAAATATTGTAAAAGAAGCTGTTGAAGTTGAA 199888 Query 44363 CAAGAATT---TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTG 44419 | | || |||| | | | ||||| | ||||| || |||||| | || Sbjct 199889 -AGGTCTTTCATATGTGA--ATCTCTACCTTGTGACTTAATTGGGATGAATTCAAGATTA 199945 Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGAT 44476 ||| || |||||||||| | |||||||| ||| || ||| | ||||| Sbjct 199946 ATGTCTCAGTATATTGAATTTGTAGCAGATCGATTA---TTAGAATGTTTAGGTTGTTCA 200002 Query 44477 AAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAA 44536 ||| | | ||| | |||| || ||| ||| ||||| ||||| | |||| ||| Sbjct 200003 AAAATTTTTTTTGCAAAAAATCCTTTTAATTGGATGGATTTAATTTCTCTACAAGGAAAA 200062 Query 44537 ACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 |||||||||||||||||||| |||| || |||||| Sbjct 200063 ACAAACTTTTTTGAAAAACGTGTTGCTGATTATCAG 200098 >seq37 Length=214198 Score = 150 bits (166), Expect = 1e-31 Identities = 283/416 (68%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||||| || | | |||| | |||||| ||||||| ||||| | | ||||||||||||| Sbjct 54791 GATAGAGAGGTAAATGATTTAGGTCCTATTTATGGTTTTCAATGGAGACATTTTGGAGCT 54850 Query 40914 AAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973 ||||| | |||||| | ||||| ||||||||||| ||||| || | || Sbjct 54851 GAATATACAAATATGTATGATAATTATGAAAATAAAGGAATTGATCAGCTAAAAAATATT 54910 Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 ||| || ||| ||| || || || || | || || ||||| || ||||| | Sbjct 54911 ATAAATTTGATAAAAAATGAACCAACAAGTAGAAGAATTATTTTGTGTGCATGGAATGTA 54970 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | ||| | || |||||||| |||||||||||| | ||||| || ||||| ||| | Sbjct 54971 AAGGATCTGGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTC 55030 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 |||| || | |||||| |||||||| |||| |||| | || || || || || Sbjct 55031 GATGGGAAATTATCATGTATCATGTATCAACGATCTTGTGATTTAGGTCTTGGTGTTCCC 55090 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 || || || || || | | |||| || ||| |||| || || || ||| || Sbjct 55091 TTCAATATTGCCTCCTACTCAATTTTCACCTACATGCTTGCTCAAGTATGTAACTTACAA 55150 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 |||| ||||| | ||| |||||| ||| || || || | ||||||||||| Sbjct 55151 CCTGCAGAATTCATACACGTTTTAGGAAATGCCCACATATATAACAATCACATAGA 55206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446728593570