Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq112 120 4e-22 >seq112 Length=225903 Score = 120 bits (132), Expect = 4e-22 Identities = 716/1138 (63%), Gaps = 22/1138 (2%) Strand=Plus/Minus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 ||||||| || || || || ||| |||||| ||| || || | ||||||||| Sbjct 222079 TTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAAATATTGCTAGTGTATGGT 222020 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 ||||| ||||||| || || || ||||||| || || || || ||||| ||||| | Sbjct 222019 TCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCAGTAGGCATAGGTGCTAAA 221960 Query 110789 A--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846 | || || | | | || || | | || || ||| || || ||| ||| | Sbjct 221959 AGTAAGGAAT--TCCTTAGTCCATGTTTTTTAATTTTTTCTTTAAGTTCATTCCAATTCC 221902 Query 110847 AGTTGAGCTTGGTTTCACCTTC------CCACATGTCAAACTGAAGCACCCCTTGGGACG 110900 ||| ||| | ||| ||| |||||| ||||||||||| | |||||| | Sbjct 221901 AGTAT---TTGTTATCAACTTTGATATTCCACATATCAAACTGAAGAATACCTTGGCTAG 221845 Query 110901 CGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCC 110959 | ||| ||| ||| | | |||||| || | || ||| ||||| | || | Sbjct 221844 CTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAGCTAATTCCATAGA-CATT 221786 Query 110960 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 111019 || | | || | ||||| |||||||| || | ||| | || || ||||||||| Sbjct 221785 TCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAATTCTTTTGCTTCATCT 221726 Query 111020 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 || || | | || | | | |||||| || || | ||||| ||||| | || Sbjct 221725 GATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATCCTTGTACACCAATTCCT 221666 Query 111080 ATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 || ||||| |||| | | || || || || || || ||| |||||| ||||||| || Sbjct 221665 ATTGGTCTATGTCTCCTGTTTGATCTCTC-AGCTTCCTTAACAGGATAATAATTTCTTTC 221607 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 111198 ||| | | || || |||| | |||| ||| ||||| ||||||| | ||||| | ||| Sbjct 221606 AATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCATATAATTTTTTAAAATT 221547 Query 111199 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 |||| | ||| | ||| | || | || || ||||| || || ||||| Sbjct 221546 AAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAGATGCTAAGTTACAAAC 221487 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| ||||| ||| || |||| ||||| |||| || || ||||| Sbjct 221486 AGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATAGATTACTACATTTAAT 221427 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || || ||||| ||||| ||| || || || | ||| ||||| | |||||| || Sbjct 221426 TGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTGTACAACATGTATGG 221367 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAAT 111438 || || || |||| || | |||||| ||| | ||| ||| |||| | Sbjct 221366 TACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAATCTTGAGCTAATACAGT 221307 Query 111439 GGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCAC 111498 || | || | || |||||| || | |||||| || |||||| Sbjct 221306 TTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATTTTTCAAATTCTTCACCCCA 221247 Query 111499 CGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTC 111558 | || | |||||| | | |||||| | | || ||| | | ||||| Sbjct 221246 TGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAGTCCAATTTTTATTTTCCTT 221187 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 111618 ||| | ||||| || | ||||||| ||| | | |||| | ||||||| | Sbjct 221186 AACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAAATAAATCTCTAGCTCTTAA 221127 Query 111619 CTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGG 111678 ||||| | ||| || || || || || || || || | || || | |||||||| Sbjct 221126 TTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAAATATGTCTGAATGCCATGG 221067 Query 111679 CTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGC 111735 |||| ||| ||||| | ||||| |||| | ||| |||||| |||||| | || Sbjct 221066 TTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGC 221007 Query 111736 TGTGGCGTTAAATACGCGAAGCATTGG-AATAATACCATCTGATTGACCATTTGTCCC 111792 ||| ||||||| || | | |||||| | |||| || | ||| |||||| || || Sbjct 221006 TGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTTGAAATACCATTAGTTCC 220950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016974334400