Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq213 127 2e-24 seq95 87.8 2e-12 >seq213 Length=18882 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || ||| | || || || || || ||| | || Sbjct 1042 ATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATCA 983 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 982 GACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 923 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||||| || || |||||||| || || | || | || ||||| ||| Sbjct 922 CAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAAC 863 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || || || || || || ||||| || || || || || Sbjct 862 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATT 825 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || ||||| | || || ||| | || || | || || || | || Sbjct 811 ATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTCG 752 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 751 GATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 692 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||||| || || |||||||||||||| | || | || ||||| ||| Sbjct 691 CAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAAC 632 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || || || ||||| ||| | || || || || || || Sbjct 631 ATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATT 594 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || ||||| |||| || ||| | || || | || || ||| | || Sbjct 580 ATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATCG 521 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||||||||| || ||||| || ||||||||||| Sbjct 520 GATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAG 461 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||||| ||| || |||||||| || || | || | || ||||| ||| Sbjct 460 CAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAAC 401 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || || || || || || ||||| || || || || || Sbjct 400 ATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATT 363 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 27052 CGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC 27111 ||||||||| || || |||||||| || || ||||| |||||||| ||||| || Sbjct 1209 CGATTGAGAATGTAAAGGCGAAAATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAA 1150 Query 27112 GTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTC 27171 | || |||| || || || ||||||||||| | || | | ||||| ||||| | Sbjct 1149 GATTGATATTTGCGGGAAAGCAATTGGAAGATGGCAGAACATTATTGGATTATAACATCC 1090 Query 27172 AAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 ||||||| || ||||||||||| || || || || Sbjct 1089 AAAAGGAATCTACCTTACATTTAGTCTTACGATT 1056 >seq95 Length=106154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 195/291 (67%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 135493 GCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGAT 135552 |||||||| | ||||| ||| || | |||| || | ||||||||||||||||| || Sbjct 49593 GCAGCTTATCCATGAAGGTGTAATTCATGAATTTTTGAGAATGTATTGGGCAAAAAAAAT 49652 Query 135553 ATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTA 135612 || | ||||| | | | | || ||| || | || ||| | ||||| | Sbjct 49653 TCTGAACTGGTCAGAAAATTCCAAAACCGCACTAAAATATGCCATAAAACTAAATGACGA 49712 Query 135613 CTA--CAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGC 135670 | || || || ||| || |||| ||| || || |||||||||||| Sbjct 49713 ATTTGCAATT--GACGGAAAAACATCTAATGCCTATGTTGGAATTATGTGGTCTATCATG 49770 Query 135671 GGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAAC 135730 |||||||| || ||| | ||||| || || | | ||||| || ||| | |||||||| Sbjct 49771 GGTGTACATGACCAAAGTTGGAATGAACGATCAATTTTTGGAAAAATTAGATATATGAAT 49830 Query 135731 TATGACGGTTGTACAAGAAAATTTAATGTAAATTTGTACGTGAGAAAATAT 135781 ||| |||| |||| ||||| ||| || | || ||||| || ||||||| Sbjct 49831 TATAACGGATGTAAGAGAAATTTTGATATTAACATGTACATGTCAAAATAT 49881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907994577280