Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq213 138 3e-27 seq21 114 3e-20 seq100 104 6e-17 >seq213 Length=18882 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| | ||| | ||| |||||||| |||| || ||||| | || ||||| ||||| || Sbjct 833 GACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTC 892 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || || || || || || || | || |||||| ||||| ||||| |||||||| ||||| Sbjct 893 TAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTG 952 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 || || ||| ||| || ||||||||||| | ||| || || | |||||| ||||| Sbjct 953 AATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTCTT 1012 Query 225684 GCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||| ||||| | || | |||||| Sbjct 1013 TCCCGTCAAGGTTTTCACAAATATCTGCATT 1043 >seq21 Length=88002 Score = 114 bits (126), Expect = 3e-20 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || |||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||| Sbjct 23871 GCACCATACACAGGTTGTGCTATGGCAGAATATTTTAGAGATAATGGGAAACATGCTTTA 23812 Query 5091 ATCATCTACGATGATTTAAGTAAACA 5116 || || | ||||||||||||||||| Sbjct 23811 ATAATTTTTGATGATTTAAGTAAACA 23786 >seq100 Length=495214 Score = 104 bits (114), Expect = 6e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 |||||||||||||| |||| ||||||||| |||||| | ||| ||||| || || Sbjct 295298 AGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 295239 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || || | || ||||| |||| | ||||| ||||||| || || || |||||| Sbjct 295238 CCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAAT-TTTTGC 295180 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || | | ||| || || ||| | ||| || || | | || || || ||| | || Sbjct 295179 TTTAATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAA 295120 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 ||||||| ||| | ||||||||| Sbjct 295119 TGTTTTTACGAATATTTGCATTTT 295096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192501955408316