Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq139 221 1e-52 >seq139 Length=234430 Score = 221 bits (244), Expect = 1e-52 Identities = 579/875 (66%), Gaps = 25/875 (3%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| |||| || || || | || || ||||| || || || ||||| |||| || Sbjct 200110 AACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAG 200051 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 ||||| ||||| ||| ||| ||||| |||| || |||| ||| || Sbjct 200050 AGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACCTAA 199991 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | ||||| || ||||||||||| |||||||| ||| | | | || || Sbjct 199990 ACATTCTAATAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAATTCAT 199931 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGT---ATGTCAAAAACTCTTGTTCTATAGTTACGG 4482 |||||||| ||||| ||||| | | || | ||| || || || | || | Sbjct 199930 CCCAATTAAG-TCACAAGGTAGAGATTCACATATGAAAGACCTTTCAACTTCA---ACAG 199875 Query 4483 CTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACA 4542 ||||| | | |||| ||| | |||| | | |||||||| |||| | | | | | Sbjct 199874 CTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAACTATATA 199815 Query 4543 ATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACG 4602 || ||| |||||| ||| || ||||| ||||| ||||| ||||| || ||| | Sbjct 199814 TTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGG 199755 Query 4603 TTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAA 4662 | | ||| | | | | ||||||| |||||| ||||| || ||| || Sbjct 199754 TAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACCACTAA 199695 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 | | ||| ||||| || ||| ||||| | || | || || | | | | Sbjct 199694 ACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTG---TAT 199638 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 | || ||||||||| |||||| ||||| |||||||| || || | | |||| Sbjct 199637 CATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAG 199578 Query 4783 CGTTAAATAATTT---ACTTT---TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 | | |||||| || || || ||||| |||| |||||| ||||||| |||| Sbjct 199577 CATGAAATAAATTTAAACGTTCTTTTTCA------TCTTTTATATAATTGTCTATAAGTA 199524 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 ||||| |||| |||||||||||||| | || || |||||| |||||| | ||| Sbjct 199523 AACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTTTAG 199464 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCG 4955 ||||||| | |||||| || | ||||| || || | || ||||| ||||||||| Sbjct 199463 CTTCTGTAATTTGAACCTCTCTTAAAAAT-TTACTGGCCAAATTTTCTAATACTATACCA 199405 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||||| ||||||||||| || || ||||| ||||| | || ||| | || | | Sbjct 199404 TCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTAAT 199345 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 |||| | | ||||| | | |||||| | ||||||| | |||||||| || ||| Sbjct 199344 TTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCT 199285 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 || |||||||| || | | ||||| ||| ||||| Sbjct 199284 TCTGCTTTTTTATAAAAATCCCAAACATCGGGATA 199250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039638267362