Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq112 484 9e-132 seq139 241 2e-58 >seq112 Length=225903 Score = 484 bits (536), Expect = 9e-132 Identities = 1140/1703 (67%), Gaps = 36/1703 (2%) Strand=Plus/Minus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| |||||||| || | |||||| ||||| | || ||| ||||||| |||||| Sbjct 222277 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 222218 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATT---TG-TATTTTGAATGGA 75633 |||| |||||| | | || || | || ||| | || || ||| |||| Sbjct 222217 CAAACGGTTTTGTATAGTTCCTTAAGGTC-TCTAGGTATTTCACTGATATACTGAACACT 222159 Query 75634 TCCGCCATCAGATATAA-TTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692 || | || |||| |||| | || || || |||| ||| | | | ||| || Sbjct 222158 ACCATTGTGAGCAATAAGTTGTTGT-TTCATGTCTTCATCCCAGAGTCCACGATCGAATA 222100 Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 | || |||| | ||||||||| |||| ||||||||| | |||||||| || Sbjct 222099 AGTCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGT 222040 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 ||||||| || || |||||||| | ||||||||||||||| || ||||| | ||| || | Sbjct 222039 AAATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATG 221980 Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTT 75872 |||| ||||||||||| | | ||| ||| || || |||||| || | ||||| |||| Sbjct 221979 CAGTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTT 221920 Query 75873 TTAGATATTTCCAATCCCAAAGATCTGATGGTACAAC------ATCCCAGAGATCGTATT 75926 | || | ||||||| ||| || || | |||| || ||| | ||| | | Sbjct 221919 TAAGTTCATTCCAATTCCAGT-ATTTGTTAT--CAACTTTGATATTCCACATATCAAACT 221863 Query 75927 GTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAG 75986 | ||||| || | |||||| || | ||| | ||| || |||| | ||| || Sbjct 221862 GAAGAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAG 221803 Query 75987 CTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAA 76046 ||| ||| | | ||||| ||| | || || || ||||| ||||| | ||||| | Sbjct 221802 CTAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTA 221743 Query 76047 GATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTC 76106 |||| |||||| || ||||||| |||||| ||||||| || |||| || Sbjct 221742 ATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 221683 Query 76107 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAG 76166 | || || ||||| || || |||||||||||| | || || | |||||||| || || Sbjct 221682 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 221623 Query 76167 GGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCT 76226 | |||||||| | || |||||||| | | |||||| || | ||| | || | Sbjct 221622 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 221563 Query 76227 TTAGTTTGAGAAAATCAAA-----TTTTCCATCTATC-ACAAACATATTAAGAGCTATAG 76280 || ||| ||||| ||| |||| | | || ||||| || | ||| |||| Sbjct 221562 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAG 221503 Query 76281 ATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATA 76340 |||||| |||||||| || || |||| | | ||||| |||||| || ||||| Sbjct 221502 ATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATA 221443 Query 76341 GATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCT 76400 |||||||||| || || || || | ||||| ||| || || |||||||| || | Sbjct 221442 GATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTT 221383 Query 76401 TATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 76460 | || | | | || || ||||||||||| || | ||||| ||| | Sbjct 221382 TGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAAT 221323 Query 76461 CTCTAGCTTTTATTATAGATTTGTATCGC---TTCTCTCTTTCATATTGTGTATATAACC 76517 || |||| | || || ||| | || || ||| |||||| | | |||||| Sbjct 221322 CTTGAGCT---AATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATT 221266 Query 76518 GTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATG 76577 ||||||||| || ||||| ||| |||||| ||||||||||| |||||||| || | Sbjct 221265 TTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAG 221206 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | || ||||||||| | ||||||||| | ||| || | ||| | |||| || Sbjct 221205 TCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAA 221146 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 ||| ||||| | ||| |||||| || || ||| ||| | | |||||| || || | Sbjct 221145 ATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAA 221086 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757 || || |||||||||||||| | ||||| || | || || ||| || | Sbjct 221085 ATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCAC 221026 Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTTA 76816 | ||||||| |||||| || || | ||| ||||||| |||||||| | |||| ||||| Sbjct 221025 CTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTT 220967 Query 76817 GATGTACCATTTGTTC--CAGAAATATAACTTCCACATGCACGAATAT-TACTAATAGAT 76873 || ||||||| |||| | | |||| | ||| | |||| |||| | || | | | Sbjct 220966 GAAATACCATTAGTTCCTCTTATATATGAATTC--TGTCCACGTATATCTTGTACT-GCT 220910 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || ||||| ||||| || | |||||| |||| ||||| ||| | || Sbjct 220909 ACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATT 220850 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 76993 || || ||| ||| | |||| || | |||||| |||||||| | Sbjct 220849 CCTTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGT 220790 Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||| |||||| ||||| || | |||||| || || |||||| || | |||| Sbjct 220789 GTCCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGA 220730 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| | || ||||| ||| | ||| || || | | || | ||| | | Sbjct 220729 TAGGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATC 220670 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 | |||||| |||| ||||| | |||||||| || || || |||||| |||| || Sbjct 220669 AAATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAAC 220610 Query 77174 GTTTTAAAACCAAAATAGTTGTA 77196 |||||||||||||| || | ||| Sbjct 220609 GTTTTAAAACCAAAGTAATCGTA 220587 >seq139 Length=234430 Score = 241 bits (266), Expect = 2e-58 Identities = 589/879 (67%), Gaps = 28/879 (3%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || ||| || || ||| | |||||||| || ||||| || ||||| |||| Sbjct 200113 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 200054 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 | || || ||||| ||| ||| ||||| | || | |||||||| | | || Sbjct 200053 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACC 199994 Query 46446 TAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 ||| |||| ||| | || |||||| || ||||| |||||| ||| | | | Sbjct 199993 TAAACATTCT--AATAA-TCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGA 199937 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTC-CGTAAGAAACTCTTGTTCAATAGTGA 46561 |||||| || || | | ||||||| || | || |||| | | ||||| | Sbjct 199936 ATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCT-TTCAACTTCAA 199878 Query 46562 CAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTT-TA 46620 |||| || || || | | || ||| || | || || || ||| || Sbjct 199877 CAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTT-TCTAATAAACTA 199819 Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 | |||| ||| |||||| ||| | ||||||||||||||||||| ||| || | Sbjct 199818 TATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTA 199759 Query 46681 AATGTGAGCCCAGGCA-TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCC 46739 || || || ||| | | || || | ||||| | |||||| ||||| |||| || Sbjct 199758 AAGGTAAGTCCATGTAATTTGTTTT-GTTTTTTAAACCAAAAAATAGCACAGAAACTACC 199700 Query 46740 AGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA---ACTGGC 46796 | ||| | ||| ||||| ||| || ||| |||| ||| ||| | | | | | Sbjct 199699 ACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGT 199640 Query 46797 ATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTC 46856 |||||| ||||| || |||||| || || ||||| || || || |||| Sbjct 199639 ATCATTT---ATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTC 199583 Query 46857 TATAGCATTAAAGAGA-----AAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 ||||||| ||| | | | ||| |||| ||| ||||| | ||| | ||||| Sbjct 199582 AATAGCATGAAATAAATTTAAACGTTCTTTT--TCA---TCTTTTATATAATTGTCTATA 199528 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 | | |||||| |||||||||| || ||||| | || || |||||| |||||| | Sbjct 199527 AGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTT 199468 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | ||||| ||||| || |||||| | ||||| | |||||| || ||||| Sbjct 199467 TTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATA 199408 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||| | | Sbjct 199407 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTT 199348 Query 47092 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151 | ||| | | || || | ||| |||||| ||||| ||||||||||||||| ||||| Sbjct 199347 AATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGAT 199288 Query 47152 GCCTCTGCTTTTTTATACATATTCCATATATCACGATAT 47190 || |||||||||||||| | || ||| | ||| ||||| Sbjct 199287 GCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATAT 199249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917343044480