Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_031267.1 Length=42979 Score E Sequences producing significant alignments: (Bits) Value seq361 141 3e-29 >seq361 Length=549 Score = 141 bits (156), Expect = 3e-29 Identities = 340/512 (66%), Gaps = 8/512 (2%) Strand=Plus/Minus Query 2589 AAGGGCATCCCGGACGACGACGATGCGCCGTTAGAGCTCGCCCGCC-CGGACGTGAAGCA 2647 ||||||||||| |||||||| |||||| || | | ||| ||| | | | | || Sbjct 547 AAGGGCATCCCCGACGACGAGGATGCGGCG----AACCCGCGCGCTTCTGCCATCCAGA- 493 Query 2648 ATTCCCGGCGCAGTCTCCCGAACCACACCTGGCGGCGCTCAACGGGTACGCGAAGCTGTT 2707 |||| ||| ||| ||| | || || |||||| ||||||| | |||||||||| Sbjct 492 --TCCCCGCGTCGTCGCCCCAGCCGCATCTGGCGAACCTCAACGCCCAGGCGAAGCTGTG 435 Query 2708 CGCCCGCGAGGCCGGCCTCCCGGACTCGGCGCTGGCGATCACCGACTACTCCAACCCGAC 2767 |||||||||| || || ||| ||||||| |||||||||||| ||| || || || Sbjct 434 CGCCCGCGAGATGTCACTTCCCGACACGGCGCTCGCGATCACCGACGTCTCGAATCCAAC 375 Query 2768 CTCGGCGGACGCCTACACCGAGTCGCGCGAGGATCTGATCTCCGAAGCCGAAGGCGCCAC 2827 ||||| || ||||| || |||| | || || ||| |||| || || |||| Sbjct 374 GTCGGCCGAGTCCTACGACGCCTCGCAGTACGAGCTCATCGCCGAGGCGGAGGGCGTGCT 315 Query 2828 GGATGACTGGTCGCTGCCGATCCGGCGGGCCGTCGCACGGGGTTTGGCGATCCAGAACGG 2887 ||||||| || || | ||||| | |||| || | | |||||| ||||||| Sbjct 314 GGATGACGCCGCGACTCCACTGCGGCGCTCGTTCGCTCGTGCCCTCGCGATCGAGAACGG 255 Query 2888 GCTGACCGAGGTGCCCAAGGAGTGGGCGACGATGGACACCCGTTGGCGCTCGCCGATGTT 2947 ||||| || || ||| ||| | | ||| | | ||| || | ||| Sbjct 254 CCTGACGTCCGTCCCGCAGGCATGGCTGTCCATGTCGCCGAAGTACCGCAATCCCAAGTT 195 Query 2948 CCAGTCCCGCGCCGCGCAAGCTGACGCCGGCACGAAGCAGCTGGCTGCGGTGCCGTGGCT 3007 || | | ||| | || | || || |||||| | |||||| | | || |||||||| Sbjct 194 CCTGGCGCGCTCGGCTGAGGCCGATGCCGGCGCCAAGCAGAGCGGGTCCGTCCCGTGGCT 135 Query 3008 GGCCGAGACCGAGGTGGGTCTCGAGTTGCTGGGTCTGACTCCGCAGCAGAAGCGCCGCGC 3067 || ||||| |||||| |||||| ||| ||||| | | | |||| || ||||| Sbjct 134 CGCTGAGACTTCGGTGGGCCTCGAGCTGCGCGGTCTCTCGGAGGACCAGATCCGACGCGC 75 Query 3068 ACTCGCGGAACGTCGCCGCGCGACCGGCTCGG 3099 | | ||||| ||||||||| ||||||| Sbjct 74 GCAGTCTGAACGCCGCCGCGCGCAGGGCTCGG 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137408076815188