Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq343 396 3e-105 seq381 343 2e-89 seq273 226 3e-54 seq139 203 3e-47 seq1439 170 2e-37 seq495 165 8e-36 seq364 127 2e-24 seq165 104 2e-17 seq166 100 3e-16 >seq343 Length=608 Score = 396 bits (438), Expect = 3e-105 Identities = 250/269 (93%), Gaps = 1/269 (0%) Strand=Plus/Plus Query 8344 TCTCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCC 8402 |||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 48 TCTCGCTCTCGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCC 107 Query 8403 GCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCA 8462 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 108 GCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCG 167 Query 8463 AAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTG 8522 ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 168 CCCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTG 227 Query 8523 GCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTG 8582 ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| Sbjct 228 GCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTG 287 Query 8583 CTGGGATTACAGGCATGAGCCACCGCGCC 8611 |||||||||||||| |||||||||||||| Sbjct 288 CTGGGATTACAGGCGTGAGCCACCGCGCC 316 >seq381 Length=708 Score = 343 bits (380), Expect = 2e-89 Identities = 234/263 (89%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 8353 GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGG 8412 || |||||||||||||||||||||| ||||| ||||||||||||||||||||||| || Sbjct 1 GTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAACCTCCGCCTCCCAGG 60 Query 8413 TTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCA 8472 ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 61 TTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCA 120 Query 8473 CGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGG 8532 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 121 CGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGG 180 Query 8533 TCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTAC 8592 ||||||||||| ||| ||| ||||| | | ||||||| |||||||||| ||||| || Sbjct 181 TCTCGAACTCCCGACTTCAGGTGATGCGTCCACCTCGGCATCCCAAAGTGACGGGATGAC 240 Query 8593 AGGCATGAGCCACCGCGCCTGGC 8615 ||||||||||||||||||| ||| Sbjct 241 AGGCATGAGCCACCGCGCCCGGC 263 >seq273 Length=851 Score = 226 bits (250), Expect = 3e-54 Identities = 219/279 (78%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| ||| || |||| ||||||| |||| ||||| |||||| ||| | ||||| Sbjct 381 TCACTCTTGTTTCCACGGCTAGAGTGCAATGGCGCGATCTTGGCTCACCGCACCTTCCGC 322 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 ||||||||||| ||| ||||||||||||||||||| || |||| ||||||||||| | Sbjct 321 CTCCCGGGTTCGAGCGCTTCTCCTGCCTCAGCCTCCCGATTAGCGGGGATTACAGGGAGG 262 Query 8465 AGCCACCACGCC-----AAGCTAATTTTTGTATTTTTAGTAG--AGAGAGGGTTTCACCA 8517 || ||||||| ||| || ||||| |||||||||| | | || || ||| Sbjct 261 CACCCCCACGCCTGGCTTGGCTGATGTTTGTGTTTTTAGTAGGCACGCCGTGTCTCTCCA 202 Query 8518 TGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCA 8577 ||||| |||||||||||| |||||| |||||| |||||| | || |||||||||| | Sbjct 201 TGTTGCTCAGGCTGGTCTCCAACTCCCGACCTCCTGTGATGCGCCCACCTCGGCCTCTCG 142 Query 8578 AAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||||||||| || ||| |||||||||| ||| |||| Sbjct 141 AAGTGCTGGGATGACGGGCGTGAGCCACCGTGCCCGGCC 103 >seq139 Length=234430 Score = 203 bits (224), Expect = 3e-47 Identities = 557/839 (66%), Gaps = 31/839 (4%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||| ||||| || |||||||| |||| ||||| ||||| || || | Sbjct 200113 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 200054 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT--ACAT 23322 || || || ||||| ||| ||| ||||| | | | | | | ||| ||| Sbjct 200053 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCA--AAAAAAATTTTTGAACAA 199996 Query 23323 GATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCAT-A 23381 ||| | ||| | | ||||||||||||||||||||| ||| |||| || || | | Sbjct 199995 CCTAAACATTCTAATAATCGATCTGCTACAAATTCAATATACTGAGACATTAA-TCTTGA 199937 Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441 || || || |||| | || | | ||| ||| ||| |||||| ||| Sbjct 199936 ATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCTTTCAACTTCAAC 199877 Query 23442 AGCATCTTT---AATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTT 23498 ||| ||||| ||| ||| ||||| ||||||| || || || ||| | | Sbjct 199876 AGCTTCTTTTACAATATTTTTAACAA---CTTCTTCTGGTAGTTTATTTTCTAATAAACT 199820 Query 23499 AAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGA 23558 | | | || ||| |||||| ||||| |||||||| |||||||| | |||||| Sbjct 199819 ATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCT 199760 Query 23559 AAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 ||| || | ||| || ||| | | ||||||||| |||||| || ||| || | Sbjct 199759 AAAGGTAAGTCCATGTAATTTGTTTT-GTTTTTTAAACCAAAAAATAGCACAGAAACTAC 199701 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | ||| | ||||| |||||| ||| || |||| | | |||||| || Sbjct 199700 CACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGA---AT 199644 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA-ATTGTT 23736 | |||| ||||||||| || |||| || || | | ||| || || || Sbjct 199643 TTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTT-ATTCTTAACTGCTGGTATATTT 199585 Query 23737 TCAATTGCTTTTAAGAGA---AAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATT 23793 ||||| || | || | | ||| || || ||||| || ||||||| | || || Sbjct 199584 TCAATAGCATGAAATAAATTTAAACGTTCTTTTTCAT---CTTTTATATAATTGTCTATA 199528 Query 23794 AGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACAT 23853 ||||||||||| |||| ||||| |||||||| | || || ||||| ||||| | Sbjct 199527 AGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTT 199468 Query 23854 CTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATA 23913 ||||||| | | |||||| || | |||||| | | || |||||||| || ||| Sbjct 199467 TTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATA 199408 Query 23914 CCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCAGTT 23970 ||||||||||| ||||| || || | |||| ||| |||||||| ||||| ||| | Sbjct 199407 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATT- 199349 Query 23971 GATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 |||||||| |||| || | ||| |||||||||| | ||| ||| |||||||||| Sbjct 199348 --TAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAA 199292 >seq1439 Length=683 Score = 170 bits (188), Expect = 2e-37 Identities = 118/133 (89%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 || || | ||||||||||||| |||||||||| | || |||||| ||||||||| |||| Sbjct 304 TTCTTATTTTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCAGGATGGTCTCGATCTCC 363 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603 ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 364 TGACCTC--GTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCC 421 Query 8604 ACCGCGCCTGGCC 8616 |||||||| |||| Sbjct 422 ACCGCGCCCGGCC 434 >seq495 Length=783 Score = 165 bits (182), Expect = 8e-36 Identities = 111/124 (90%), Gaps = 5/124 (4%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 143 TCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCG 84 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCA-----GCCTCCAGAGTAGCTGGGATTACA 8458 |||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| Sbjct 83 CCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCTCGGCCTCCCGAGTAGCTGGGATTACA 24 Query 8459 GGCA 8462 | || Sbjct 23 GACA 20 >seq364 Length=529 Score = 127 bits (140), Expect = 2e-24 Identities = 81/88 (92%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| Sbjct 529 CTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGA 470 Query 8589 TTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||||| ||||||||| ||| |||| Sbjct 469 TTACAGGCGTGAGCCACCATGCCCGGCC 442 >seq165 Length=6479 Score = 104 bits (114), Expect = 2e-17 Identities = 121/164 (74%), Gaps = 16/164 (10%) Strand=Plus/Plus Query 8351 CTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCG 8410 ||||||| |||| ||| || || |||| |||| |||||||||||| || ||||| || Sbjct 6316 CTGTTGCACAGGGTGGGGTACAATGGCGCCATCTTTGCTCACTGCAACTTCTGCCTCACG 6375 Query 8411 GGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACA-------GG--- 8460 ||| ||||| ||| |||| ||||||||||| |||||||||| |||| || Sbjct 6376 GGTCCAAGCGATTGTCCTCCCTCAGCCTCCCAGGTAGCTGGGACTACACCACACTGGGAC 6435 Query 8461 -----CAAAAGCCACCACGCCAAGCTAA-TTTTTGTATTTTTAG 8498 || ||||||| ||| |||||| |||||| |||||||| Sbjct 6436 TACACCAGCTGCCACCATGCCTAGCTAATTTTTTGGATTTTTAG 6479 >seq166 Length=2384 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 8351 CTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCG 8410 ||||||| |||| ||| || || |||| |||| |||||||||||| || ||||| || Sbjct 2227 CTGTTGCACAGGGTGGGGTACAATGGCGCCATCTTTGCTCACTGCAACTTCTGCCTCACG 2286 Query 8411 GGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACA 8458 ||| ||||| ||| |||| ||||||||||| |||||||||| |||| Sbjct 2287 GGTCCAAGCGATTGTCCTCCCTCAGCCTCCCAGGTAGCTGGGACTACA 2334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521475523399600