Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq187 141 1e-28 >seq187 Length=410067 Score = 141 bits (156), Expect = 1e-28 Identities = 566/875 (65%), Gaps = 37/875 (4%) Strand=Plus/Minus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | | || |||||| ||| |||||||| || ||||| |||||||| | || Sbjct 75443 AACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAG 75384 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 ||| || ||||| ||| ||| ||||| | || |||| || || || | || | Sbjct 75383 AGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACCTAA 75324 Query 16021 ---TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATT 16077 ||| ||| ||||| ||||||||||||||| ||||| ||| ||||||| |||| Sbjct 75323 ACATTC--TAA-TAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAATT 75267 Query 16078 AATTCCTAT-AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCG 16136 || || || ||||| | || |||| || || || ||| | |||| | Sbjct 75266 CATCCCAATTAAGTCACAA-GGTAGAGATTCACATATGAAAGACCTTTCAACTTCAACAG 75208 Query 16137 CTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACA 16196 ||||||| | |||| | | | ||| | || ||| | || || | | Sbjct 75207 CTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAACTATATA 75148 Query 16197 TTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAG 16256 ||||||| || || ||||| |||||| ||||| || || ||||| ||| ||| | Sbjct 75147 TTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGG 75088 Query 16257 TTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC-AAATGACCCCGAA 16315 | | || | | ||| | |||| || ||||| || || ||| ||| ||| | || Sbjct 75087 TAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACCACTAA 75028 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 | | |||||| |||||| ||||| || | | || ||| || | | | | | || Sbjct 75027 AC-AGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAA---TTTGTA 74972 Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC----ATCGTTTC 16431 | | |||||||| | |||| ||||| | | ||| | | | || |||| Sbjct 74971 TCATTTATCCATTTTGCTGCCCAAAGTGCTTTAT-TCTTA---ACTGCTGGTATATTTTC 74916 Query 16432 TATGGCCTTAAACAATTTC------TCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 || || | ||| || || |||||||| ||| ||||||| | || || Sbjct 74915 AATAGCATGAAATAAATTTAAACGTTCTTTTTC------ATCTTTTATATAATTGTCTAT 74862 Query 16486 CAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 |||||||| || ||||||| ||||| || || | ||||| |||||| || || Sbjct 74861 AAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTT 74802 Query 16546 TCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG-CCAGGTTCTCATTCACGA 16604 | ||| || | ||||| || || | ||||| | | | ||| || || || | Sbjct 74801 TTTAGCTTCTGTAATTTGAACCTCT-CTTAAAAATTTACTGGCCAAATTTTCTAATACTA 74743 Query 16605 TACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGT-CAGAT 16663 |||| ||||| || |||||||| || |||| || ||||| |||| ||||| | | || Sbjct 74742 TACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCAT 74683 Query 16664 GTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAG 16723 ||| | | ||||||||||||| | |||| ||| | |||||| | |||||||| Sbjct 74682 TTAATTTT-TCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAAT 74624 Query 16724 CTAGCCACTGCCTTTTTATACATTTTCCAAATATC 16758 || |||| |||||||| | | ||||| ||| Sbjct 74623 GATGCTTCTGCTTTTTTATAAAAATCCCAAACATC 74589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511392127902880