Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq49 104 2e-17 >seq49 Length=89902 Score = 104 bits (114), Expect = 2e-17 Identities = 281/422 (67%), Gaps = 16/422 (4%) Strand=Plus/Plus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 || || ||||| || || || ||||||||||||||||| ||||||| | | | | || | Sbjct 6661 GGTCCTATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAATATACA-AATATGTATGA 6719 Query 18858 -AACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916 || ||| | | ||||||| |||||||| ||| | ||||| || || |||| | Sbjct 6720 TAATTATGAAAATAAAGGAATTGATCAGCTAAAAAATATTATAAATTTGATAAAAAATGA 6779 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGT 18976 ||| ||| || |||| ||| | | | |||||| ||||||| | ||||| Sbjct 6780 ACCAACAAGTAGAAGAATTATTTTGTGTGCATGGAATGTAAAGGATCTGGATAAAATGGC 6839 Query 18977 ACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTG--C 19034 | |||| || ||||| | ||||| || ||||| || | || ||||||| || Sbjct 6840 ATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTCGATGGGAAATTATCATGTAT 6899 Query 19035 CAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATAT 19094 || |||| || |||| | ||| | || ||||| || || ||||| ||||| || Sbjct 6900 CATGTAT--CAACGATCTTGTGATTTAGGTCTTGGTGTTCCCTTCAATATTGCCTCCTAC 6957 Query 19095 GCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAATTCA 19153 || || | |||||||| | || || | || ||||| |||| | || |||||| Sbjct 6958 TCAATTTTCACCTACATGCTTGCTCAAG-TATGTAACTTACAACCTGCAG----AATTCA 7012 Query 19154 TACA----ATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGC 19209 |||| | || |||| || || || ||||| |||||| | | ||| | |||| Sbjct 7013 TACACGTTTTAGGAAATGCCCACATATATAACAATCACATAGATAGTCTGAAAATTCAGC 7072 Query 19210 TA 19211 || Sbjct 7073 TA 7074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399487036560780