Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq49 165 6e-36 >seq49 Length=89902 Score = 165 bits (182), Expect = 6e-36 Identities = 345/511 (68%), Gaps = 5/511 (1%) Strand=Plus/Minus Query 101645 GGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAG 101704 ||||| ||| |||| ||| | | ||| ||||| ||| ||| ||||||| ||| Sbjct 7096 GGAAAGGGTA-AGGAATTCTGTTTAGCTGAATTTTCAGACTATCTATGTGATTGTTATAT 7038 Query 101705 ATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCA 101764 ||||| |||| ||||| | || || || ||| |||| || ||| || |||||| Sbjct 7037 ATGTGGGCATTTCCTAAAACGTGTATGAATTCTGCAGGTTGTAAGTTACATACTTGAGCA 6978 Query 101765 ATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCA 101824 | |||| | || |||| || ||| ||||| || || || || || | || | |||| Sbjct 6977 AGCATGTAGGTGAAAATTGAGTAGGAGGCAATATTGAAGGGAACACCAAGACCTAAATCA 6918 Query 101825 GCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAAT 101884 |||| |||||||| ||| || | || ||||| | | ||||||||| | ||| Sbjct 6917 CAAGATCGTTGATACATGATACATGATAATTTCCCATCGAAAATATAAAATTGGCATAAA 6858 Query 101885 ACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAAC 101944 | ||||||||| || || |||||||| | || |||||||| ||||||| | Sbjct 6857 ATATGACAAGGTGGTAATGCCATTTTATCCAGATCCTTTACATTCCATGCACACAAAATA 6798 Query 101945 ATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACT 102004 || |||||| ||| || | ||||||| || || | | ||||| || |||| | Sbjct 6797 ATTCTTCTACTTGTTGGTTCATTTTTTATCAAATTTATAATATTTTTTAGCTGATCAATT 6738 Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTT--ATATTCTGCTCCGAAATGCCTCCACT 102062 |||| || ||||| | ||| ||| |||||| ||||| ||||| ||||| | Sbjct 6737 CCTTTATTTTCATAATTAT--CATACATATTTGTATATTCAGCTCCAAAATGTCTCCATT 6680 Query 102063 GAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTA 102122 |||| ||||| | ||| || | ||| | | ||||| ||| | | ||||||| Sbjct 6679 GAAAACCATAAATAGGACCTAAATCATTTACCTCTCTATCAAATAGTTTTCTATTATCTA 6620 Query 102123 AAAATGATCTAGATCCATTCGCATCCCAAAT 102153 ||||| ||||| |||||| || ||||| || Sbjct 6619 AAAATTCTCTAGTTCCATTTGCTTCCCATAT 6589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361235860822484