Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq177 381 7e-101 seq187 185 1e-41 >seq177 Length=178137 Score = 381 bits (422), Expect = 7e-101 Identities = 1141/1749 (65%), Gaps = 34/1749 (2%) Strand=Plus/Minus Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| ||||| || || | || || ||||| | ||||| ||||||| |||||| Sbjct 43667 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 43608 Query 53009 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATAGAT 53065 |||| ||||| || | | ||||| ||| || | | || ||| ||||| | Sbjct 43607 CAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACTA 43548 Query 53066 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 53125 ||| | | |||| | || || || |||| ||| | | | ||| ||| Sbjct 43547 CCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATAAG 43488 Query 53126 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 53185 || |||| | ||| ||||| || || ||||||||| | |||||| | |||| Sbjct 43487 TCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAA 43428 Query 53186 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 53245 ||||| || || || ||||| | ||| ||||| ||||| || ||||| | ||| |||||| Sbjct 43427 ATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCA 43368 Query 53246 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 53305 || ||||||||||| | | ||| ||| || || || | | || | ||||| ||||| Sbjct 43367 GTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTA 43308 Query 53306 AGAGGTTCCCAATTCCAAAGATCCGACGGTA-CAACNNNNNNNNNNNNNNNTT------G 53358 || | ||||||||| | | || |||| | | Sbjct 43307 AGTTCATTCCAATTCCAGTATTT----GTTATCAACTTTGATATTCCACATATCAAACTG 43252 Query 53359 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 53417 |||||||| | || || | || | ||| |||| | || ||| || | | | || Sbjct 43251 AAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAG 43193 Query 53418 CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 53477 ||| ||| | | ||||||||| | || || || ||||| || || | ||||||| Sbjct 43192 CTAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTA 43133 Query 53478 GATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 53537 |||| |||||| || | ||||| |||| || ||||| | ||| ||||||| Sbjct 43132 ATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 43073 Query 53538 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 53597 |||| |||||||| || || |||||||||||| | || || | |||||||| || || Sbjct 43072 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 43013 Query 53598 GATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCT 53657 |||||||||| | || |||||||| | | ||||| ||| | ||| | || | Sbjct 43012 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 42953 Query 53658 TCAGTTTGAGAAAATCAAA---TTGTCCATCTAT---TACAAACATGTTCAATGCAATAG 53711 | ||| ||||| ||| || | ||| | |||||| | || ||||||| Sbjct 42952 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAG 42893 Query 53712 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 53771 |||| | |||||||| || || |||| | | ||||| |||||| ||| ||| | Sbjct 42892 ATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATA 42833 Query 53772 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 53831 |||||||||| || || || |||||||||| ||||||| || ||||| | ||| | Sbjct 42832 GATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTT 42773 Query 53832 TATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGA 53891 | || | ||| |||| ||| ||||||||||| || || ||| || ||| | Sbjct 42772 TGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAAT 42713 Query 53892 CACGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 53948 | |||| || || || ||| | || |||||| ||| || | ||| ||| Sbjct 42712 CTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATT 42656 Query 53949 GTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 54008 |||||| || || ||||| | ||| || |||||||||| |||||||| || | Sbjct 42655 TTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAG 42596 Query 54009 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 54068 ||| | | | ||||| |||| ||||||||| | ||| |||| ||||| ||| || Sbjct 42595 TCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAA 42536 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 ||| |||||| | ||| ||| || || || ||| ||| | | ||| || || | | Sbjct 42535 ATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAA 42476 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATA-TGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 || || |||||||| ||||| | |||| || || | ||| | ||| ||| Sbjct 42475 ATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGA-TCCTTTTCTTTTTCCTCCA 42417 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATT 54246 || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || || Sbjct 42416 CCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTT 42358 Query 54247 GGATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATA 54305 || |||||| || || ||||| | | | | |||| |||| | || || Sbjct 42357 TGAAATACCATTAGTTCCTCTTATATATGAATTCTGT-CCACGTATATCTTGTACTGCTA 42299 Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365 ||| || || ||||| ||||| || || || ||| ||||||| || ||| | || | Sbjct 42298 CACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTC 42239 Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 54425 | || ||| ||| | |||| || | |||||| |||||||| | | | Sbjct 42238 CTTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTG 42179 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 | || | ||||||||| || || | || || ||||| |||||| || | |||| | Sbjct 42178 TCCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGAT 42119 Query 54486 ACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 | || || | ||| |||| ||| | ||| || || | || || | ||| | || Sbjct 42118 AGGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCA 42059 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 ||||| |||||||| | ||| || || || || | || || ||| |||| || | Sbjct 42058 AATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAACG 41999 Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665 ||||||||||||| || | ||| ||| || ||| ||| ||| || || | | Sbjct 41998 TTTTAAAACCAAAGTAATCGTAGTTAAAATCACGTGTATAATCAATCTCTTTATTTAATC 41939 Query 54666 TATCCTTAT 54674 ||||||||| Sbjct 41938 TATCCTTAT 41930 >seq187 Length=410067 Score = 185 bits (204), Expect = 1e-41 Identities = 380/557 (68%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 |||| || || ||||||||||||| ||| ||| ||| || ||||| | | | | Sbjct 75127 TGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAATTTGTTT 75068 Query 24210 CGCTTTTTAAGCCAAAATATGG-ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 | ||||||| |||||| || | || ||| | ||| ||| | || ||||| || Sbjct 75067 TGTTTTTTAAACCAAAAAATAGCACAGAAACTA-CCACTAAACAGTATACCTTCAACACA 75009 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 24328 ||| || | || ||||||| || | | |||| |||||| ||| ||||| Sbjct 75008 TGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTATCATTTATCCATTTTGCTGCCCA 74949 Query 24329 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 24388 | || || || || || || || | || ||||||| ||| | || ||| Sbjct 74948 AAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTC 74889 Query 24389 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTC 24448 || |||||| | ||| | || || | | |||||| |||| ||||| || ||||| Sbjct 74888 TTTTTCATCTTTTATATAATTGTCTATAAGTAAACTATATGTTTCTGAATGTATATTTTC 74829 Query 24449 AATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAA 24508 | || ||||||||| ||| || | |||| || ||||| || || ||| | |||| Sbjct 74828 CACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAA 74769 Query 24509 TCGTTCTG-CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 | | ||| | |||||||| ||||| || ||||| ||||||||||| || ||||||| Sbjct 74768 TT-TACTGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACAT 74710 Query 24568 GTTTTATAAAATATTTTTCGT-CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 24626 |||| ||||||| ||||| | || | ||| ||| | |||| || | ||| | ||| Sbjct 74709 GTTTAATAAAATGCTTTTCATTCTCAT-TTAATTTTTCAAAATCTTTTAAATCACTTGAT 74651 Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 24686 | ||| | |||||| |||||||||||||||| ||||| |||||||| | || ||| | Sbjct 74650 AAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCAAACA 74591 Query 24687 TCATGATATTGAATTGG 24703 || ||||| |||||| Sbjct 74590 TCGGGATATAAAATTGG 74574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593695743424320