Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq49 178 1e-39 >seq49 Length=89902 Score = 178 bits (196), Expect = 1e-39 Identities = 219/297 (74%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280 ||||| |||||| | ||||| |||||||||||||||||||||||||||||| | ||| Sbjct 6655 GATTTAGGTCCTATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAATATACAAATATG 6714 Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAA 20340 | |||||| ||||| | ||||| || ||||| |||| ||||| || ||| Sbjct 6715 TATGATAATTATGAAAATAAAGGAATTGATCAGCTAAAAAATATTATAAATTTGATAAAA 6774 Query 20341 AC-GAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTT 20399 | ||||| | | | |||||||||||||| || || ||||| | || ||| || | Sbjct 6775 AATGAACCAACAAGT-AGAAGAATTATTTTGTGTGCATGGAATGTAAAGGATCTGGATAA 6833 Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 |||||| || || || |||||||| ||||||||||||| || || |||| || Sbjct 6834 AATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATATTTTCGATGGGAAATTATC 6893 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||| |||||||||||||| |||| | || || |||||||| ||||||||||| Sbjct 6894 ATGTATCATGTATCAACGATCTTGTGATTTAGGTCTTGGTGTTCCCTTCAATATTGC 6950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399167050148380