Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq49 107 3e-18 >seq49 Length=89902 Score = 107 bits (118), Expect = 3e-18 Identities = 299/453 (66%), Gaps = 27/453 (6%) Strand=Plus/Plus Query 104167 GACGATAGAACAGGAATTGGAACTAAAAATGTATTTGGAGAACAATTAAAATTTAATTTA 104226 || |||||||||||| |||| || | ||||||| | | || | ||||||| Sbjct 6409 GATGATAGAACAGGAGTTGGTGTATTAAGTAAATTTGGATATATGATGAAGTATAATTTA 6468 Query 104227 AGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAA-AGGAGTTGTAGAAGA 104285 || |||||| || |||| || || ||| || |||| || |||| || | || || Sbjct 6469 GCTGAATATTTTCCCCTATTAACAACCAAGAAA-TTGTTTGTAAGAGGAATTATTGAGGA 6527 Query 104286 ACTCTTATGGTTTATTAGCGGGAGTACAGATGT---TTCTGTATTAAATCAAAAAGGAGT 104342 | | | |||||||| || ||| || ||| | | | |||||| |||| | | Sbjct 6528 ATTACTTTGGTTTATAAGAGGGGAAACCAATGGAAATATTTTGTTAAATAAAAATG---T 6584 Query 104343 TAAAATTTGGAATAAAAATGCA------GAATCGTTTTATACACAACAAAATCTTTTTaa 104396 | ||| ||| | ||||| | |||| ||||| | | | |||| ||| | Sbjct 6585 GAGAATATGGGAAGCAAATGGAACTAGAGAAT--TTTTAGATAATAGAAAACTATTTGAT 6642 Query 104397 aaa-----aaaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTATGG---TGAA 104448 | | |||||||||||| ||||||||||||||||| |||||||||| ||| |||| Sbjct 6643 AGAGAGGTAAATGATTTAGGTCCTATTTATGGTTTTCAATGGAGACATTTTGGAGCTGAA 6702 Query 104449 AATTATATTGGGTGCGATA---ATAAATATGGTGGTATAGATCAACTCAAAAATATTATT 104505 || | | || |||| || || || || || ||||| || ||||||||||| Sbjct 6703 TATACAAATATGTATGATAATTATGAAAATAAAGGAATTGATCAGCTAAAAAATATTATA 6762 Query 104506 ACAACAATTCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTGGAACCCAAAG 104565 | || |||||||||| ||||||||| || || | || ||||| |||| Sbjct 6763 AATTTGATAAAAAATGAACCAACAAGTAGAAGAATTATTTTGTGTGCATGGAATGTAAAG 6822 Query 104566 GATAATTCTAAAATGGCACTTCCTCCTTGTCAT 104598 ||| |||||||||| | || ||||||||| Sbjct 6823 GATCTGGATAAAATGGCATTACCACCTTGTCAT 6855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679784794082880