Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq176 89.7 4e-13 seq129 84.2 2e-11 >seq176 Length=118070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || | || | ||| || || || ||||| || ||||| || || | Sbjct 109669 TCCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGA 109610 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||||||||||||||| || ||| | || | |||||||||||| || Sbjct 109609 TAATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 109550 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| ||| || | ||| || || || ||| Sbjct 109549 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAAC 109490 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| | || || || || ||||| || || || |||||| Sbjct 109489 ATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 109441 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||| | || || |||| || | ||| | || |||||||| || ||||| || || | Sbjct 109437 CCTCCTCTTAATCGTAAG-ACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 109379 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||| || |||||||| || ||| | || | |||||||||||| || Sbjct 109378 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 109319 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| ||| || | ||| ||||| | || Sbjct 109318 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 109259 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | || || ||||| ||||| ||||| || |||||| Sbjct 109258 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 109210 >seq129 Length=280093 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || || || |||||||| || || ||||| || | ||||| | | ||| Sbjct 42054 TACCAAGTTCAGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTC 41995 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||| |||||| | || | |||||||| || | ||| | |||||||||| Sbjct 41994 TAATTGTTTTCCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTG 41935 Query 18236 AATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| |||||| | | | ||| || || | | || |||| || || ||| Sbjct 41934 AATTT-TTGCTTTAATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTTT 41876 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 | || | ||||||||||| || |||||||||||| Sbjct 41875 TTCCCCTTAATGTTTTTACGAATATTTGCATTTTT 41841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379327892579580