Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq176 107 2e-18 >seq176 Length=118070 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || ||||||||||| || || || || ||| | ||||| || || Sbjct 109442 ATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTCG 109501 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | ||| |||| |||||| | || ||||| | || || || Sbjct 109502 GATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 109561 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAAC-GATTACAG 25010 ||| | ||||||| ||| || |||||| ||||||| | | || || | | ||||| | Sbjct 109562 CAAAGATTAATATTTGCAGGAAAACAATTGGAAGA-TGGAAGAACATTATCGGATTATAA 109620 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||||||| | || || || |||||||||||||| | ||||| Sbjct 109621 CATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGG 109668 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||||||||| |||||||| || || || || || || ||||||| ||||| Sbjct 109211 ATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATCA 109270 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| |||| |||||| | || ||||| | || || || Sbjct 109271 GACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 109330 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAAC-GATTACAG 25010 ||| | ||||||| ||| || |||||| | || || | | || || | | ||||| | Sbjct 109331 CAAAGATTAATATTTGCAGGAAAACAATTAGAGGA-TGGAAGAACATTATCGGATTATAA 109389 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| |||||||| | || | || ||||| |||||||| | |||||| Sbjct 109390 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGT 109438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || |||||||| || || || || || ||| | ||||| ||||| Sbjct 109673 ATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATCG 109732 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | || | ||| |||| |||||| | || ||||| | || || ||| Sbjct 109733 GATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAG 109792 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAAC-GATTACAG 25010 ||| | ||||||| || || |||||| | || || | | || || | | ||||| | Sbjct 109793 CAAAGATTAATATTCGCAGGAAAACAATTAGAGGA-TGGAAGAACATTATCGGATTATAA 109851 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| |||||||| | || | || ||||| |||||||| | |||||| Sbjct 109852 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGT 109900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418286238289280