Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq187 100 3e-16 seq176 86.0 6e-12 >seq187 Length=410067 Score = 100 bits (110), Expect = 3e-16 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 57536 TAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||||| ||| || ||| |||||| || ||||| | | || ||||| ||||| Sbjct 74558 TAGATTTACATTGTACCCAATTTTATATCCCGATGTTTGGGATTTTTATAAAAAAGCAGA 74617 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 |||||| |||||||| | |||||| |||| | || | ||| | | |||| || Sbjct 74618 AGCATCATTTTGGACAGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAA 74677 Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715 | || || ||| | ||||||||||||| || || || ||||| || || || Sbjct 74678 ATTAAATGAGAATGAAAAGCATTTTATTAAACATGTATTAGCATTTTTTGCAGCTAGTGA 74737 Query 57716 TGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGC 57775 |||||| || || ||||||| | | ||||| | ||| || ||| | || || || Sbjct 74738 TGGTATAGTATTAGAAAATTTGGCCAGTAAATTTTTAAGAGAGGTTCAAATTACAGAAGC 74797 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825 | | |||||| ||||||| | || | ||||| | |||||||||| Sbjct 74798 TAAAAAATTTTACTCATTTCAAATAGCAGTGGAAAATATACATTCAGAAA 74847 >seq176 Length=118070 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || ||||||| || || |||||| | || || ||| | || Sbjct 109673 ATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATCG 109732 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || || ||| || |||||||| | || ||||| ||| Sbjct 109733 GATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAG 109792 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG-ATTATAA 31371 || | |||||||||| || ||||| || || || | | || || | || ||||||| Sbjct 109793 CAAAGATTAATATTCGCAGGAAAACAATTAGAGGA-TGGAAGAACATTATCGGATTATAA 109851 Query 31372 CATTCAAAAAGAATCGACT 31390 ||| || |||||||| ||| Sbjct 109852 CATCCAGAAAGAATCTACT 109870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445746986873280