Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq177 614 5e-171 seq187 306 3e-78 >seq177 Length=178137 Score = 614 bits (680), Expect = 5e-171 Identities = 1053/1510 (70%), Gaps = 41/1510 (3%) Strand=Plus/Minus Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTA-TATATATTGCTAGT 37184 || ||||| ||||| || |||||| | ||||||||| ||| || ||||||||||| Sbjct 43475 TGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCT-GTAGTAAATATTGCTAGT 43417 Query 37185 ATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGG 37244 |||||||||| || ||||| || | ||||||||| || ||||||||||||||||| || Sbjct 43416 GTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCAGTAGGCATAGG 43357 Query 37245 TGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCA 37304 ||||| || | | ||| || | ||||||| | |||||| | | ||| ||||||||||| Sbjct 43356 TGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTAAGTTCATTCCA 43297 Query 37305 ATCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCATATTGTAGAATACCTTTAC 37360 || ||| | | |||| |||| | |||||||||| | || |||||||||| | Sbjct 43296 ATTCCAGTATT-TGTTATCAACTTTGATATTCCACATATCAAACTGAAGAATACCTTGGC 43238 Query 37361 TCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAG 37420 | |||||| | | | ||| | ||||| || ||||||||||||| ||| || ||| Sbjct 43237 TAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAGCTAATTC-CA--TAG 43181 Query 37421 A---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTT 37477 | ||||| ||| ||||| || || ||||| |||||| | |||||||| |||||||| Sbjct 43180 ACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAATTCTTTTGCTT 43121 Query 37478 CTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGA 37537 | || ||| | | ||| | || | ||||| ||||| || || || ||||| | Sbjct 43120 CATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATCCTTGTACACCAA 43061 Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597 | ||||| ||||||||| || | || ||||| | ||| | || ||||||||||| Sbjct 43060 TTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAGGATAATAATTTC 43001 Query 37598 TATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGA 37657 | || || ||||| | || |||| | | ||||| |||||| || || | | Sbjct 43000 TTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCATATAATTTTTTAA 42941 Query 37658 ACATAAATACGTTATTATTA------ACAAATTTACTCAACGAAATAGATCCTAGATTAC 37711 | |||| || || || | |||||||||| || | ||||||| ||| |||| Sbjct 42940 AATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAGATGCTAAGTTAC 42881 Query 37712 ATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTACAGAGATTACTCGAT 37770 | ||||||||||||||| || | || ||| ||| || || || |||||||| || Sbjct 42880 AAACAGCAACTTCATCTG-GTGATGTATATTCTATTATTTCACAGCATAGATTACTACAT 42822 Query 37771 CTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATA 37830 ||||||| || ||||| ||||||| ||||| |||||| |||||||| || | || Sbjct 42821 TTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTTTGTACAACATG 42762 Query 37831 TACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTA 37890 || || ||| ||| || ||| | | ||||| ||||||| ||||| || Sbjct 42761 TATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAA--TCTTGAGCTA 42704 Query 37891 ACGATCGCTTTAAttt-----ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAAT 37945 | | | ||| || ||||||| ||| || | | ||||||||| | ||| | Sbjct 42703 AT-ACAGTTTTTTTTCCTAAATTTTCTTC--TTCATACTTTTCATATAATTTTTCAAATT 42647 Query 37946 CATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTT 38005 | | |||||| || | || ||||||||||| ||||||||||| || ||| | || Sbjct 42646 CTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAGTCCAATTTT 42587 Query 38006 CATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTT 38065 || || | || | || |||||||||||| || ||||| | ||| |||||||||| Sbjct 42586 TATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAAATAAATCTC 42527 Query 38066 TGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAG 38125 | | ||| ||||||| || || ||| ||||| || |||||| || ||||| || | Sbjct 42526 TAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAAATATGTCTG 42467 Query 38126 CGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAA 38185 ||||||||||| ||||| | | | || |||| |||||| | || || |||| | Sbjct 42466 AATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCACCTTGATCTA 42407 Query 38186 TATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGT 38245 ||||||| |||| | ||| | | ||||||||| ||||||| || || || | || | Sbjct 42406 CATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATCCGTTTGAAATACCAT 42347 Query 38246 TTATACCGGATATATAAGTACCCTTAGCTCGTATAT----TACTTATCGACAATCCTATT 38301 | | || |||||| | | || | ||||||| |||| | ||| || || Sbjct 42346 TAGTTCCTCTTATATATGAATTCTGTCCACGTATATCTTGTACT--GCTACA--CCAATA 42291 Query 38302 CCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATA 38361 ||||||||| ||| ||| ||||| ||||||||||| || ||||| || ||||| ||| Sbjct 42290 CCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTCCTTCAATA 42231 Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 || | || || || | ||||||| |||||||| || ||| || || | Sbjct 42230 GAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTGTCCCTGAA 42171 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 ||||||||||| || | ||||||| | || |||||| |||| || ||| |||||| Sbjct 42170 TTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATAGGTTTCT 42111 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 | | | | |||| |||| | || ||||| | ||||| ||||| | || ||| ||| Sbjct 42110 AATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCAAATGCTGT 42051 Query 38542 GGTCTTTCTATTATTTTATTATT-CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTAT 38600 ||||||||||| ||||||||||| | ||| || ||| ||| ||||||| ||||| | Sbjct 42050 GGTCTTTCTATGATTTTATTATTAATACGTAA-TAAATATGATCTTTCTAACGTTTTAAA 41992 Query 38601 TCCAAAATAA 38610 ||||| ||| Sbjct 41991 ACCAAAGTAA 41982 >seq187 Length=410067 Score = 306 bits (338), Expect = 3e-78 Identities = 588/859 (68%), Gaps = 16/859 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| ||| ||| ||| ||| ||||| || || || |||| ||| || || | Sbjct 75433 TTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAA 75374 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | |||||||||| | | || || | |||| ||||||||| | |||| Sbjct 75373 TCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAAT 75314 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||| |||||| || ||||| ||||||||||||||||| | ||||||| || || | Sbjct 75313 AATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAATTCATCCCAATTAAG 75254 Query 11519 TCCACCGGAATAG---CAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATT 11575 || || | || || | | ||| || |||| | | ||| || || | | Sbjct 75253 TCACAAGGTAGAGATTCACATATGAAAGACC---TTTCAACTTCAACAGCTTCTTTTACA 75197 Query 11576 ATCGACGTTATAACTTCCTTAGATGGTGGATGT---AATAAATGTTTAAACATTAAACAC 11632 || | | |||||| | | | || || | |||||| || | |||| ||| Sbjct 75196 ATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAAC---TATATATTAGACAG 75140 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||| |||||| ||||| |||||||| ||||||||||| ||| || | ||| Sbjct 75139 TTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCA 75080 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 | | | ||||||| | |||||| |||||| || |||| ||| | ||| Sbjct 75079 TGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACCACTAAACAGTATA 75020 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATATCCA 11811 || || ||| |||| |||||| | ||||||| || || | |||| | | |||||| Sbjct 75019 CCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTATC-ATTTATCCA 74961 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 |||| |||||| ||||| || || || | || |||| ||||| | |||||| Sbjct 74960 TTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAA 74901 Query 11872 ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 || | |||| | | |||| ||| ||| | ||||| | ||||||||| ||||||| Sbjct 74900 ATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTATAAGTAAACTATATGTTTCTGA 74841 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTAC 11991 ||| |||||||||| |||||||||||| || || | || |||| | || || Sbjct 74840 ATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAAC 74781 Query 11992 ATCCACATAAAATCTTTCCG-CTAAATTCTCATTTACAATACCATCACTAGATGCAAAAA 12050 || | ||||| || | | | ||||| || ||| ||||||||||||| |||||||| Sbjct 74780 CTCT-CTTAAAAATTTACTGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAA 74722 Query 12051 ATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTA 12110 |||||| || |||||| ||||| | ||||| | | | ||||||| || |||| | || Sbjct 74721 ATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTAATTTTTCAAAATCTTTTA 74662 Query 12111 AATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACA 12170 |||| |||||||||||| ||||||| | |||||||| ||| ||| || |||||| | Sbjct 74661 AATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAA 74602 Query 12171 TTTTCCAGATATCATGATA 12189 | ||| | ||| |||| Sbjct 74601 AATCCCAAACATCGGGATA 74583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468504395744960