Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq177 389 5e-103 seq187 197 2e-45 >seq177 Length=178137 Score = 389 bits (430), Expect = 5e-103 Identities = 1120/1714 (65%), Gaps = 32/1714 (2%) Strand=Plus/Minus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||||| || || | || || ||||| | ||||| ||||||| |||||| Sbjct 43667 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 43608 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 65096 |||| ||||| || | | ||||| ||| || | | || ||| ||||| Sbjct 43607 CAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACTA 43548 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 ||| | || |||| | || || || |||| ||| | | | ||| ||| Sbjct 43547 CCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATAAG 43488 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 || |||| | ||| ||||| || || ||||||||| | |||||| | |||| Sbjct 43487 TCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAA 43428 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 ||||| || || || ||||| | ||| ||||| ||||| || ||||| | ||| |||||| Sbjct 43427 ATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCA 43368 Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 65336 || ||||||||||| | | ||| ||| || || || | | || | ||||| ||||| Sbjct 43367 GTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTA 43308 Query 65337 AGAGGTTCCCAATTCCAAAGATCCGACGGTA-CAACNNNNNNNNNNNNNNNTT------G 65389 || | ||||||||| | | || |||| | | Sbjct 43307 AGTTCATTCCAATTCCAGTATTT----GTTATCAACTTTGATATTCCACATATCAAACTG 43252 Query 65390 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 65448 |||||||| | || || | || | ||| |||| | || ||| || | | | || Sbjct 43251 AAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAG 43193 Query 65449 CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 65508 ||| ||| | | ||||||||| | || || || ||||| || || | ||||||| Sbjct 43192 CTAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTA 43133 Query 65509 GATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 65568 |||| |||||| || | ||||| |||| || ||||| | ||| ||||||| Sbjct 43132 ATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 43073 Query 65569 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 65628 |||| |||||||| || || |||||||||||| | || || | |||||||| || || Sbjct 43072 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 43013 Query 65629 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 65688 |||||||||| | || |||||||| | | |||||| ||| | ||| | || | Sbjct 43012 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 42953 Query 65689 TCAGTTTGAGAAAATCAAA---TCGCTCATCTAT---TACAAACATGTTCAATGCAACAG 65742 | ||| ||||| ||| | | ||| | |||||| | || |||| || Sbjct 42952 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAG 42893 Query 65743 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAA 65802 |||| | |||||||| || || |||| | | ||||| |||||| ||| ||| | Sbjct 42892 ATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATA 42833 Query 65803 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 65862 |||||||||| || || || |||||||||| ||||||| || ||||| | ||| | Sbjct 42832 GATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTT 42773 Query 65863 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 65922 | || | ||| |||| ||| |||||||||||| || || ||| || ||| | Sbjct 42772 TGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAAT 42713 Query 65923 CTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAATC 65979 || |||| || || || ||| | || |||||| ||| || | ||| ||| Sbjct 42712 CTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATT 42656 Query 65980 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 66039 ||| || || || ||||| | ||| || |||||||||| |||||||| || | Sbjct 42655 TTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAG 42596 Query 66040 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 66099 ||| | | | ||||| |||| ||||||||| | ||| |||| ||||| ||| || Sbjct 42595 TCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAA 42536 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 |||||||||| | ||| ||| || || || ||| ||| | | ||| || || | | Sbjct 42535 ATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAA 42476 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 || || ||||||| ||||| | |||| || | ||| | ||| ||| | Sbjct 42475 ATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCAC 42416 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTG 66278 | ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || || Sbjct 42415 CTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTT 42357 Query 66279 GATGTACCATTGGTCCCGGAGATATA-GCTTCCACTTGCACGAATATTACTAATTGATAG 66337 || ||||||| || || ||||| | | | | |||| |||| | || || Sbjct 42356 GAAATACCATTAGTTCCTCTTATATATGAATTC-TGTCCACGTATATCTTGTACTGCTAC 42298 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||| || || ||||| ||||| || || || ||| ||||||| || ||| | || || Sbjct 42297 ACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTCC 42238 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 || ||| ||| | |||| || | |||||| |||||||| | | || Sbjct 42237 TTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTGT 42178 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 || | ||||||||| || || | || || ||||| |||||| || | |||| || Sbjct 42177 CCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATA 42118 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 || || | ||| |||| ||| | ||| || || | || || | ||| | || Sbjct 42117 GGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCAA 42058 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 ||||| |||||||| | ||| || || || || || || || ||| |||| || || Sbjct 42057 ATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAACGT 41998 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 66671 |||||||||||| || | ||| ||| || ||| Sbjct 41997 TTTAAAACCAAAGTAATCGTAGTTAAAATCACGT 41964 >seq187 Length=410067 Score = 197 bits (218), Expect = 2e-45 Identities = 585/889 (66%), Gaps = 20/889 (2%) Strand=Plus/Minus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 75452 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 75393 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 |||| || || || ||||| ||| || ||||| | || | |||||||| Sbjct 75392 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGA 75333 Query 35968 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 | | || || ||| ||| |||| |||||| |||||||| ||||| ||| | Sbjct 75332 ACAACCTAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAA 75276 Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCA 36082 | ||||||| || || | | | || |||| |||| || |||| | | |||| Sbjct 75275 TCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACA-TATGAAAGACCT-TTCA 75218 Query 36083 ATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATAC---AAT 36139 | || || ||| ||| |||| | | || |||||| || || ||| Sbjct 75217 ACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAAT 75158 Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199 ||| || | || | ||| ||||| |||| || || ||||||||||||| | Sbjct 75157 AAAC---TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGT 75101 Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGC 36258 || ||| ||| || ||||| | | | | | ||||||| |||||| || | || Sbjct 75100 TCATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAG 75041 Query 36259 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318 ||| | ||| ||| | || ||||| || ||| || | || ||| ||| || | Sbjct 75040 AAACTA-CCACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA 74982 Query 36319 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378 | |||| |||||| ||| |||||| || || || || || || || Sbjct 74981 TGAATTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTAT 74922 Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 | || ||||||| ||| | || ||| || |||||| | ||| | || || Sbjct 74921 ATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTAT 74862 Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498 | | |||||| |||| ||||| || ||||| | || ||||||||| ||| || Sbjct 74861 AAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTT 74802 Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTG-CTAAATTTTCATTCACTA 36557 | |||| || ||||| || || ||| | ||||| | ||| | |||||||| |||| Sbjct 74801 TTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATT-TACTGGCCAAATTTTCTAATACTA 74743 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||||| ||||||||||| || ||||||||||| ||||||| ||||| || Sbjct 74742 TACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCAT 74683 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 ||| ||| | |||| || | ||| | |||| ||| | |||||| |||||||||||| Sbjct 74682 TTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATG 74623 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 36726 |||| ||||| |||||||| | || ||| | || ||||| |||||| Sbjct 74622 ATGCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGG 74574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658144136574560