Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq177 419 3e-112 seq187 210 3e-49 >seq177 Length=178137 Score = 419 bits (464), Expect = 3e-112 Identities = 1131/1714 (66%), Gaps = 32/1714 (2%) Strand=Plus/Minus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||||| || || | || || ||||| | ||||| ||||||| |||||| Sbjct 43667 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 43608 Query 78919 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 78975 |||| ||||| || | | ||||| ||| || | | || ||| ||||| Sbjct 43607 CAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACTA 43548 Query 78976 CCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 79035 ||| | || |||| | || || ||||||| ||| | | | ||| ||| Sbjct 43547 CCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATAAG 43488 Query 79036 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 79095 || |||| | ||| ||||| || || ||||||||| | |||||| | |||| Sbjct 43487 TCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAA 43428 Query 79096 ATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCC 79155 ||||| || || |||||||| | |||||||| ||||| || ||||| | ||| ||||| Sbjct 43427 ATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCA 43368 Query 79156 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTT 79215 || ||||||||||| | | ||| ||| || || || | | | | ||||| ||||| Sbjct 43367 GTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTA 43308 Query 79216 AGAGATTCCCAATCCCAAAG------ATCAGACGGGACAACATTCCAAAGATCATATTGT 79269 || | ||||| ||| |||| || | ||||| | |||| | || Sbjct 43307 AGTTCATTCCAATTCCAGTATTTGTTATCAACTTTGATA---TTCCACATATCAAACTGA 43251 Query 79270 AGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGC 79328 |||||||| | ||||| | | | ||| || | |||||| || | ||| || Sbjct 43250 AGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAGC 43192 Query 79329 TAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAG 79388 |||||| | | |||||||| | || || || ||||| ||||| | ||||| | Sbjct 43191 TAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAA 43132 Query 79389 ATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 79447 |||| |||||| | | | || | ||||| |||| || ||||| | ||| ||||||| Sbjct 43131 TTCTTTTGCTTCATCTGAT-TCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 43073 Query 79448 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 79507 |||| |||||||| || || |||||||||||| | || || | |||||||| || || Sbjct 43072 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 43013 Query 79508 GATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCT 79567 |||||||||| | || |||||||| | | ||| || || | ||| | || | Sbjct 43012 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 42953 Query 79568 TTAGTTTGAGAAAATCAAA---TCGTCCATCTAT---TACAAACATGTTCAACGCGACAG 79621 || ||| ||||| ||| | | ||| | |||||| | || || | || Sbjct 42952 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCAATAG 42893 Query 79622 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGA 79681 |||| | |||||||| || || |||| | | ||||| |||||||||| ||| | Sbjct 42892 ATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCATA 42833 Query 79682 GGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 79741 | |||||||| ||||| || |||||||||| ||||||| || ||||| | ||| | Sbjct 42832 GATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATCTT 42773 Query 79742 TATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 79801 | || | ||| | || ||| |||||||||||| || || ||| || ||| | Sbjct 42772 TGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAAAT 42713 Query 79802 CTCGAGCCTTTATTATAGACTTGTATCTC---TTTTCTCTTTCGTATTGTGTATATAATC 79858 || |||| || || || || | || |||||| ||| || | | ||||||| Sbjct 42712 CTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAATT 42656 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 ||| || || || ||||| || || || |||||||| | |||||||| || | Sbjct 42655 TTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACATTAAAG 42596 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 ||| | | || ||||| |||| ||||||||| | ||| |||| ||||| ||| || Sbjct 42595 TCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCATAAA 42536 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 ||| |||||| | ||| || || || || ||| ||| | | ||| || || | | Sbjct 42535 ATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATTCAA 42476 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 || || |||||||| ||||| | |||| || | ||| || ||| ||| | Sbjct 42475 ATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTCCAC 42416 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCATTG 80157 | ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || || Sbjct 42415 CTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCGTTT 42357 Query 80158 GATGTACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTACTAATTGATAG 80216 || ||||||| || || ||||| | | | | |||| |||| | || || Sbjct 42356 GAAATACCATTAGTTCCTCTTATATATGAATTCTGTC-CACGTATATCTTGTACTGCTAC 42298 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || ||||| ||||| || || || ||| ||||||| || ||| | || || Sbjct 42297 ACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAATTCC 42238 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 || || ||| | |||| || | |||||| |||||||| | | || Sbjct 42237 TTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGGTGT 42178 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || | ||||||||| || || | || || ||||| |||||| |||| |||| || Sbjct 42177 CCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATGATA 42118 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 || || | ||| ||||| ||| | ||| || || | | || | ||| | || Sbjct 42117 GGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAATCAA 42058 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| |||||||| | ||| || ||||| || || || || ||| |||| || || Sbjct 42057 ATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAACGT 41998 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550 |||||||||||| || | ||| ||| || ||| Sbjct 41997 TTTAAAACCAAAGTAATCGTAGTTAAAATCACGT 41964 >seq187 Length=410067 Score = 210 bits (232), Expect = 3e-49 Identities = 597/906 (66%), Gaps = 20/906 (2%) Strand=Plus/Minus Query 49650 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 49709 || || |||||| || ||| || || ||| | ||||||||||| ||||| || ||||| Sbjct 75452 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 75393 Query 49710 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 49769 ||||| | || || ||||| ||| ||| ||||| | || | |||||||| Sbjct 75392 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGA 75333 Query 49770 AAATCCCAA---TTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCAT 49826 | | || || ||| ||| |||| ||| || |||||||| ||||| ||| | Sbjct 75332 ACAACCTAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAA 75276 Query 49827 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAG-TAAGAAATTCTTGTTCAA 49885 | ||||||| || || | | | || |||| || || |||| | | ||||| Sbjct 75275 TCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCT-TTCAA 75217 Query 49886 TGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC---AATA 49942 || || ||| ||| |||| | |||| |||||| || || |||| Sbjct 75216 CTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATA 75157 Query 49943 AATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTT 50002 || || | || | ||| ||||| || | || || |||||||||||||||| Sbjct 75156 AAC---TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTT 75100 Query 50003 CGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCA 50061 | ||| ||| || ||||| | | | | | ||||||| |||||| || | || | Sbjct 75099 CATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGA 75040 Query 50062 AATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA 50121 || ||| | ||| | || ||||| || ||| || |||| ||| ||| || | Sbjct 75039 AACTACC-ACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA- 74982 Query 50122 CTGGCGCTGT--CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA 50179 || ||| ||| |||||| ||| |||||| || || || || || || | Sbjct 74981 -TGAATTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTA 74923 Query 50180 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 50239 | |||| || |||| ||| | || ||| || |||||| | |||| | || | Sbjct 74922 TATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTA 74863 Query 50240 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 50299 | | | |||||| |||| ||||| || ||||| | || || |||||| ||| || Sbjct 74862 TAAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATT 74803 Query 50300 ATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTA 50359 | |||| || ||||| || || ||| | ||||| || |||||||| |||| Sbjct 74802 TTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTA 74743 Query 50360 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTG 50419 | || ||||| ||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 74742 TACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCAT 74683 Query 50420 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 50479 ||| ||| | |||| || | ||| | |||| ||||| |||||| |||||||||||| Sbjct 74682 TTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATG 74623 Query 50480 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAA 50539 |||| ||||| |||||||| | || ||| | || ||||| |||||| | | || Sbjct 74622 ATGCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGGGTACAATGTAA 74563 Query 50540 ATCTAT 50545 |||||| Sbjct 74562 ATCTAT 74557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718237519393760