Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq187 219 4e-52 >seq187 Length=410067 Score = 219 bits (242), Expect = 4e-52 Identities = 587/883 (66%), Gaps = 27/883 (3%) Strand=Plus/Minus Query 13331 AAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTT 13390 ||||||| | ||| | | | | || ||||| || ||| ||||| ||| ||| | || Sbjct 75471 AAAAAACCTGATCCTTTCTTTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTT 75412 Query 13391 TTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTG 13450 ||||||||||||| ||||| |||| || || || ||||| ||| || |||||| Sbjct 75411 TTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTT 75352 Query 13451 TTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAA 13510 ||| | ||| | ||| |||||||| | |||||||| ||| || | ||| |||| Sbjct 75351 TTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAATAATCGATCTGCTACAAATTCAA 75292 Query 13511 TATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATT-AGTT 13569 |||| ||||||||||| ||||||| || |||| | ||| | | ||| | | Sbjct 75291 TATACTGAGACATTAATCTTGAATTCATCCCAATTAAGTCACAAGGTAG-AGATTCACAT 75233 Query 13570 AAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAA 13629 | || |||| | ||||| || |||| |||| | |||| || || | | Sbjct 75232 ATGAAAGACCTTTCAACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTG-- 75175 Query 13630 GGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCAT 13687 | || |||||| | || | |||| ||| |||||| ||| | || |||| Sbjct 75174 GTAGTTTATTTTCTAATAAACTATATATTAGACAGTTAAAATCTGTATGTAATCCTTCAT 75115 Query 13688 CTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCTCGtttttttAAC 13746 |||||||||| ||||| || ||| || | ||| || || | | ||||||| ||| Sbjct 75114 CTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAATTTGTTTT-GTTTTTTAAAC 75056 Query 13747 CAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATT 13806 ||||| || ||| ||| || ||| | ||| || ||||| ||| |||| Sbjct 75055 CAAAAAATAGCACAGAAACTACCACTAAACAGTATACCTTCAACACATGCATTTGCTACA 74996 Query 13807 AGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCATTTTCTAGCCCATTCAGAtt 13864 | || |||| |||| || ||||| | || ||||||||| ||||| | || Sbjct 74995 ATTCTTTCTGCAAATGAA-----TTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTT 74941 Query 13865 tttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT--CCTTCTCTTTAGT 13922 | || |||| || |||| || |||| ||||||| | | |||| ||| | Sbjct 74940 TATTCTTAACTGCTGGTATATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCAT 74881 Query 13923 ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGC 13982 || | || ||| | |||||||| ||||| |||| || ||||| ||||| | || Sbjct 74880 CTTTTATATAATTGTCT--ATAAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGC 74823 Query 13983 TATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTC 14042 ||| ||||| ||||| | ||||||||| ||| ||||| ||||| || | Sbjct 74822 TATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAAT-TTAC 74764 Query 14043 TG-CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAA 14101 || |||| ||||| || |||||||||||||||||||||||||| |||| | ||||| Sbjct 74763 TGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAA 74704 Query 14102 TAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGAT 14158 |||| | ||| |||||| | | | ||||| |||| |||||| | || | || Sbjct 74703 TAAAAT---GCTTTTCATTCTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAAT 74647 Query 14159 CTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 ||| ||| ||| |||||||||| || | ||||||||||| Sbjct 74646 CTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 74604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478567957457760