Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq177 385 6e-102 seq187 197 2e-45 >seq177 Length=178137 Score = 385 bits (426), Expect = 6e-102 Identities = 1143/1751 (65%), Gaps = 38/1751 (2%) Strand=Plus/Minus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| ||||| || || | || || ||||| | ||||| ||||||| |||||| Sbjct 43667 TGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTCC 43608 Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT--TG-TATTCTGAATGGAT 71058 |||| ||||| || | | ||||| ||| || | | || ||| ||||| Sbjct 43607 CAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACTA 43548 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 ||| | ||||||| | ||| || ||||||| ||| | | | ||| ||| Sbjct 43547 CCATTGTGAGCAATAAGTTGTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATAAG 43488 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 || |||| | ||||||||| || || ||||||||| | |||||| | |||| Sbjct 43487 TCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAA 43428 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 ||||| || || || ||||| | || ||||| ||||| || ||||| | ||| |||||| Sbjct 43427 ATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCA 43368 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTT 71298 || ||||||||||| | | || ||| || || |||||| | ||||| ||||| Sbjct 43367 GTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTA 43308 Query 71299 AGAGATTCCCAATTCCAAAGATCCGATGGTA-CAACNNNNNNNNNNNNNNNNNNNNNN-- 71355 || | ||||||||| | || || |||| Sbjct 43307 AGTTCATTCCAATTCCAGTATT----TGTTATCAACTTTGATATTCCACATATCAAACTG 43252 Query 71356 ----ATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGG 71410 || || | ||||| | | | ||| |||| | || ||| || | ||| | Sbjct 43251 AAGAATACCTTGGCTAGCTGGACTA-CCTTCATAAGATTCATATTTCCCATAAATTTTAG 43193 Query 71411 CTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGA 71470 ||| ||| | | |||||||| |||| || || ||||| ||||| | ||||| | Sbjct 43192 CTAATTCCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTA 43133 Query 71471 GATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 71530 |||| |||||| || | ||||| |||| || ||||| | ||| ||||||| Sbjct 43132 ATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATC 43073 Query 71531 CTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 71590 |||| || ||||| || || ||||| |||||| | || || | |||||||| || || Sbjct 43072 CTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAG 43013 Query 71591 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCT 71650 |||||||||| | || |||||||| | | |||||| || | ||| | || | Sbjct 43012 GATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCAT 42953 Query 71651 TTAGTTTGAGAAAATCAAA---TCTCCCATCTAT---TACAAAC--ACGTTCAAGGCAAC 71702 || ||| ||||| ||| | | ||| | |||||| || | || |||| Sbjct 42952 ATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACAT--AAAGCAAT 42895 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 |||||| | |||||||| || || |||| | | ||||| ||| |||||| ||| Sbjct 42894 AGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAGCA 42835 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 ||||||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 42834 TAGATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAATC 42775 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 || || | || | || ||| |||||||||||| || || ||| || ||| | Sbjct 42774 TTTGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCATAA 42715 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTC---TTTTCTCTTTCGTATTGTGTATATAA 71939 || |||| || || | | || | || |||||| ||| || | | |||||| Sbjct 42714 ATCTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATATAA 42658 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATTGTCT-AATCCAGGACATTCATTCGGACACATCA 71998 | ||| || || || ||||| | || || || || ||||||||||| |||||||| | Sbjct 42657 TTTTTCAAATTCTTCACCCCATGT-TTCACTCAAACCTGGACATTCATTTGGACACATTA 42599 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 | | ||| | | || || || |||| ||||||||| | ||| |||| ||||| ||| Sbjct 42598 AAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAGCAT 42539 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 ||||| |||||| | ||| || || || || ||| ||| | | ||| || || Sbjct 42538 AAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAAATT 42479 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | || || |||||||| ||||| | |||| || | ||| | ||| || Sbjct 42478 CAAATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTCCTC 42419 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCA 72237 | || ||||||| |||||||| || | ||| ||||||| |||||||| | |||| || Sbjct 42418 CACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAAT-CCG 42360 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAATATTGCTAATTGA 72296 || || |||||| || || ||||| | | | | |||| |||| | || Sbjct 42359 TTTGAAATACCATTAGTTCCTCTTATATATGAATTCTGTC-CACGTATATCTTGTACTGC 42301 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||| || || ||||| ||||| || || || ||| ||||||| || ||| | || Sbjct 42300 TACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATGTTTCAAAAAT 42241 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 || || ||| ||| | |||| || | |||||| |||||||| | | Sbjct 42240 TCCTTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTTGTGGTCTTGG 42181 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || | ||||||||| || || | || || ||||| |||||| |||| |||| Sbjct 42180 TGTCCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTGACATCAGATG 42121 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || || | ||| ||||| ||| | |||||| || | | || | ||| | Sbjct 42120 ATAGGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATACTCTCATAAT 42061 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 || |||||| |||||||| | ||| || ||||| || || || || ||| |||| || Sbjct 42060 CAAATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATGATCTTTCTAA 42001 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 |||||||||||||| || | ||| ||| || ||| ||| ||| | ||| | Sbjct 42000 CGTTTTAAAACCAAAGTAATCGTAGTTAAAATCACGTGTATAATCAATCTCTTTATTTAA 41941 Query 72657 TTTATCCTTAT 72667 | ||||||||| Sbjct 41940 TCTATCCTTAT 41930 >seq187 Length=410067 Score = 197 bits (218), Expect = 2e-45 Identities = 593/905 (66%), Gaps = 18/905 (2%) Strand=Plus/Minus Query 41755 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTT 41814 || || |||||| || ||| || || ||| | ||||||||||| ||||| || || || Sbjct 75452 TTCAGCCATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTT 75393 Query 41815 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 41874 ||||| | || || ||||| ||| ||| ||||| | || | |||||||| Sbjct 75392 TCCTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGA 75333 Query 41875 AAATCCCAA---TTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCAT 41931 | | || || ||| ||| |||| |||||| | ||||| ||||| ||| | Sbjct 75332 ACAACCTAAACATTCT--AAT-AATCGATCTGCTACAAATTCAATATACTGAGACATTAA 75276 Query 41932 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCA 41989 | ||||||| || || | | | || |||| |||| || |||| | | |||| Sbjct 75275 TCTTGAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACA-TATGAAAGACCT-TTCA 75218 Query 41990 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AAT 42046 | || || ||| ||| |||| | | || |||||| || || ||| Sbjct 75217 ACTTCAACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAAT 75158 Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 ||| || | || | ||| ||||| || | || |||||||||||||||| | Sbjct 75157 AAAC---TATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGT 75101 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAG-ACGC 42165 || ||| ||| || ||||| | | | | | ||||||| |||||| |||| || Sbjct 75100 TCATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAG 75041 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 ||| | ||| ||| | || ||||| || ||| || | || ||| ||| || | Sbjct 75040 AAACTA-CCACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA 74982 Query 42226 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 42285 | |||| |||||| ||| |||||| || || || || || || || Sbjct 74981 TGAATTTGTATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTAT 74922 Query 42286 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGAT 42345 |||| || |||| ||| | || ||| || |||||| | ||| | || || Sbjct 74921 ATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTAT 74862 Query 42346 CAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 | | |||||| |||||||||| || ||||| | || || |||||| ||| || Sbjct 74861 AAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTT 74802 Query 42406 TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTAT 42465 | | || || |||| || || ||| | ||||| || |||||||| ||||| Sbjct 74801 TTTAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTAT 74742 Query 42466 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGT 42525 || ||||| ||||||||||| || ||||||||||| ||||||| ||||| | | | Sbjct 74741 ACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATT 74682 Query 42526 TAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGA 42585 |||||| | |||| || | ||| | |||| ||||| |||||| | ||||||||||| Sbjct 74681 TAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGA 74622 Query 42586 TGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 ||||||||| |||||||| | || ||| | ||| ||||| ||||||| | | ||| Sbjct 74621 TGCTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGGGTACAATGTAAA 74562 Query 42646 TCTAT 42650 ||||| Sbjct 74561 TCTAT 74557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671109971887840