Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq176 104 2e-17 seq177 86.0 6e-12 >seq176 Length=118070 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || || ||||| || | ||||||||||| || ||||| ||||| Sbjct 109899 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 109840 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | |||||| || || | || | | |||||||||||| || Sbjct 109839 AATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGGA 109780 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| |||| | || | || |||| | |||||| Sbjct 109779 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTACA 109720 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| ||||| |||||||| ||||| Sbjct 109719 TCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCAT 109673 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| || || ||||| || | ||||||||||| || ||||| ||||| Sbjct 109437 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 109378 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | |||||| || ||| | || | | ||| |||||||| || Sbjct 109377 AATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 109318 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| |||| | || | ||||| | | |||||| Sbjct 109317 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTACA 109258 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| ||||| || ||||| ||||| Sbjct 109257 TCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCAT 109211 >seq177 Length=178137 Score = 86.0 bits (94), Expect = 6e-12 Identities = 176/261 (67%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 157334 GGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAAT 157393 ||||| || || ||||||||||| | ||| | ||||| | ||| | |||||||||| Sbjct 42620 GGACATTCATTTGGACACATTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAAT 42561 Query 157394 ATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATG 157453 | ||| |||||||| | ||| | | ||||| | ||| | ||||| | ||| Sbjct 42560 AAATCTGGAACCCAAACAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGA 42501 Query 157454 TTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCT 157513 ||| | || | || || || | ||||| ||||||| ||||||| || ||||| Sbjct 42500 TTTTTTCTCAAATCTAGAAATTCAAATATGTCTGAATGCCATGGTTCAATATATACTGCA 42441 Query 157514 TGGGCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACT 157570 | |||||||| || ||||||||||| || | | | ||| ||||||||| Sbjct 42440 AATGATCCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACT 42381 Query 157571 CGCAGCATTGGTAGCAGTCCG 157591 | | |||||||| | |||| Sbjct 42380 CTTAACATTGGTACTAATCCG 42360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506992319522880