Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq176 122 6e-23 >seq176 Length=118070 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||| |||||| || || || || |||||| || || |||||||| | Sbjct 109668 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGAT 109609 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | |||| ||||||||||||||||||||||| || | ||| || || | || Sbjct 109608 AATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 109549 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| |||||| |||||| || || | ||| ||||| | | ||| ||| Sbjct 109548 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACA 109489 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || ||||| || ||||| ||||| ||||| Sbjct 109488 TCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCAT 109442 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 || ||||||||| |||| ||| || || |||| || ||||| || || |||||||| Sbjct 109441 TCCACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC 109382 Query 43951 GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 |||| | |||| || |||||||||||||||||||| || | ||| || || | Sbjct 109381 CGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGG 109322 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 || | ||||| |||||| |||||| || || | ||| || |||| | || Sbjct 109321 TGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTC 109262 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| ||| || || || || || || || ||||||||||| ||||| Sbjct 109261 TACATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCAT 109211 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 |||||||||| |||| ||| || || |||| || ||||| || || |||||||| Sbjct 109901 AACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCG 109842 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 |||| | |||| || |||||||||||||| ||||| || | |||||| || | | Sbjct 109841 ATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTG 109782 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| |||||| || || | ||| |||||| | | || | Sbjct 109781 GAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTA 109722 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| | || || || || || || || || ||||| ||||| ||||| Sbjct 109721 CATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCAT 109673 Score = 104 bits (114), Expect = 2e-17 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43891 TCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC 43950 || ||||||||| |||| ||| || ||||||| || || ||||| || |||||||| Sbjct 109210 TCCACCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATC 109151 Query 43951 GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTG 44010 |||| | |||| |||||||| ||||| ||||||||||| | |||||| || | Sbjct 109150 CAATAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGG 109091 Query 44011 AGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTC 44070 |||| ||||| ||||| |||||| || || | ||| ||||| | | ||| Sbjct 109090 TGGTATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATCCGATGACTC 109031 Query 44071 CACATCGACCGTAATTGTTTTACCGGTTAAA 44101 ||||| | || || |||||||| ||||| Sbjct 109030 AACATCCAAGGTGATCGTTTTACC--TTAAA 109002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354762535699632