Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq187 223 3e-53 >seq187 Length=410067 Score = 223 bits (246), Expect = 3e-53 Identities = 557/839 (66%), Gaps = 13/839 (2%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| ||||| || ||| | |||||||||||||||||||||||||| || ||||| Sbjct 75434 TTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAA 75375 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| ||| ||||||||||| | | || | |||| ||| ||||| | ||| Sbjct 75374 ATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAA 75315 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||| || || ||||| || || ||||| |||||| | ||||| || ||||| Sbjct 75314 TAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAATTCATCCCAATTAA 75255 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| | || ||| || || |||| | ||||| ||||| | || || Sbjct 75254 GTCACAAGGTAGAGATTCACATATGAAAGACCTTTCAACTTCAACAGCTTCTTTTACAAT 75195 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 | | | | || | ||| | | |||| || || | || | ||| ||| Sbjct 75194 ATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAACTATATATTAGACAGTTAAA 75135 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||| || ||||||||||||||||| ||||| || || ||| || || || | | Sbjct 75134 ATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGGTAAGTCCATGTAA 75075 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 | ||||||||| |||||| |||||| || ||| ||| | ||| ||||| Sbjct 75074 TTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACCACTAAACAGTATACCTTC 75015 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338 ||| |||| |||| | ||||| || | | | ||| || | |||||| || Sbjct 75014 AACACATGCATTTGCTACAATTCTTTCTGCAAATGAA---TTTGTATCATTTATCCATTT 74958 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 | ||||| |||||| | ||||| || | | |||||||| || || | |||||||| Sbjct 74957 TGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGT-ATATTTTCAATAGCATGAAATAAAT 74899 Query 13398 ---AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 || || || | | ||| |||||| | ||||| | ||| ||||| |||||| Sbjct 74898 TTAAACGTTCTTTTTCA---TCTTTTATATAATTGTCTATAAGTAAACTATATGTTTCTG 74842 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 |||| |||||||||| |||||||| || ||||| | |||| |||| | |||| Sbjct 74841 AATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTGTAATTTGAA 74782 Query 13515 CTTCGGAGTAAAATCTTTCTG-CTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 | || ||||| || ||| | || ||||| ||||| || |||||||| |||||| Sbjct 74781 CCTCTCTTAAAAAT-TTACTGGCCAAATTTTCTAATACTATACCATCACTAGCTGCAAAA 74723 Query 13574 aaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGA 13633 || || | || || |||||||| | ||||| || || || ||| ||||| Sbjct 74722 AATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTAATTTTTCAAAATCTTTT 74663 Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 ||||| |||||||||||| || ||| | |||||||| || || | || || ||||| Sbjct 74662 AAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCTTTTTTATA 74604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430964099948568