Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq176 176 1e-38 seq129 140 7e-28 seq187 107 4e-18 >seq176 Length=118070 Score = 176 bits (194), Expect = 1e-38 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 || ||||||| | |||| |||| ||||| |||||||||||||| || ||||| || || Sbjct 109437 CCTCCTCTTAATCGTAAG-ACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 109379 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || || |||| ||||||||| ||||| |||| || |||||||| || || Sbjct 109378 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 109319 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||| ||||| ||||| || || |||||||| || | ||| || | |||||| Sbjct 109318 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 109259 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || ||||| || || | ||||| ||||||||||||||| Sbjct 109258 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 109210 Score = 163 bits (180), Expect = 7e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 || ||||||| | |||| |||| ||||| |||||||||||||| || ||||| || || Sbjct 109899 CCTCCTCTTAATCGTAAG-ACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 109841 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || || |||| ||||||||| || || |||| || || ||||| || || Sbjct 109840 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGG 109781 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||| ||||| ||||| || || |||||||| || | ||||| | |||||| Sbjct 109780 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTAC 109721 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || ||||| || || | ||||| || |||||||||||| Sbjct 109720 ATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 109672 Score = 147 bits (162), Expect = 5e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| | | |||| || | ||||| |||||||| || ||||| || || Sbjct 109669 TCCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGA 109610 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || ||||| | ||||||||| ||||| |||| || |||||||| || || Sbjct 109609 TAATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 109550 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTA 104510 |||||||| ||||| ||||| || || |||||||| || | ||||| | ||| || | Sbjct 109549 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATC-CGAGGACTCAA 109491 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || | || || ||||| || || | ||||| || |||||||||||| Sbjct 109490 CATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 109441 Score = 129 bits (142), Expect = 1e-24 Identities = 131/168 (78%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 || ||||||| | |||| |||| |||||| |||||||| || || || ||||| || | Sbjct 109206 CCTCCTCTTAATCGTAAG-ACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAA 109148 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||| || ||||| | ||| ||||| ||||| || | || || |||||||| || Sbjct 109147 TAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGG 109088 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 ||||||||| ||||||||||| || || |||||||| || | ||||| Sbjct 109087 TATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATC 109040 >seq129 Length=280093 Score = 140 bits (154), Expect = 7e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| ||||| || ||| || |||| | || ||||| ||||||||| Sbjct 42041 GTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTTTCCC 41982 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| || |||| || | || ||| |||| ||||||||||| |||||||| Sbjct 41981 GCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCTTTA 41922 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 | |||||| | ||||| | ||| ||||| || | ||| || || || | | |||| Sbjct 41921 ATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAATGTT 41862 Query 104543 TTTACAAATATCTGCATTTT 104562 ||||| ||||| |||||||| Sbjct 41861 TTTACGAATATTTGCATTTT 41842 >seq187 Length=410067 Score = 107 bits (118), Expect = 4e-18 Identities = 193/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTG-GAAAAA 268818 || || |||||||| | |||||| ||||| | || ||| |||| ||||| |||||| Sbjct 74619 GCATCATTTTGGACAGCTGAAGAAATAGATTTATCAAGTGATTTAAAAGATTTTGAAAAA 74678 Query 268819 TTTAAAACCAGAAGAAAGAAGATTTATATCTTATAT-TCTT-GCGTTTTTTGCAGTTAGT 268876 || ||| |||| || | |||| ||| | || | || || |||||||||| |||| Sbjct 74679 TT--AAATGAGAATGAAAAGCATTT-TATTAAACATGTATTAGCATTTTTTGCAGCTAGT 74735 Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 |||||||| || |||||| | | || || | |||||| || ||| | ||| Sbjct 74736 GATGGTATAGTATTAGAAAATTTGGCCAGTAAATTTTTAAGAGAGGTTCAAATTACAGAA 74795 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | | |||||| ||| || ||||| | |||||||| |||||||| | || ||| Sbjct 74796 GCTAAAAAATTTTACTCATTTCAAATAGCAGTGGAAAATATACATTCAGAAACATATAGT 74855 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAA 269032 || | ||||| | ||||||| | ||| | || ||| Sbjct 74856 TTACTTATAGACAATTATATAAAAGATGAAAAAGAA 74891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151347003014672