Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq94 176 5e-39 seq49 125 9e-24 >seq94 Length=33378 Score = 176 bits (194), Expect = 5e-39 Identities = 472/714 (66%), Gaps = 27/714 (4%) Strand=Plus/Plus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | ||| | || | | ||||| ||||||| || || Sbjct 30225 AATTTTAATTTTGAAGAATTAGGAATTGGAGCATTAGATGAAGAATTTAAGACAATATTT 30284 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTT--CCTATCGAAATAATaaaaaaaTTAGGCTGTA 164509 ||| || | |||||| |||| | || || | | | ||| | ||| || |||| || Sbjct 30285 AGAAGAACTTTTGCTAGTAGA--ATTTACCCAAACTATATAGTTAAACAACTAGGTATTA 30342 Query 164510 AACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTC 164569 ||||| | || ||| || | || |||| ||||| ||| || ||||||||||| || Sbjct 30343 AACATGTTAAGGGACTTATCTTGTATGGTCCTCCAGGTACAGGAAAAACATTAATCGCAA 30402 Query 164570 GATGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 || || | | || | || || | | || || |||||| ||||||| || ||| | Sbjct 30403 GACAGATAGGTAAAACATTAAATGCAAGAGAACCA--AAAATTATTAATGGACCAGAAAT 30460 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687 ||| || ||||||||||| ||||||||| ||| || |||| || ||| | || ||||| Sbjct 30461 ATTAAATAAATATGTAGGACAGTCAGAAGAAAATATTCGAAATTTATTTAAAGATGCTGA 30520 Query 164688 AGAAGAACA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGA 164746 | |||| | ||| | || || | | | ||||||| ||||| | | || || | Sbjct 30521 AATAGAATATAAACAGAG-TGGGGAAAATTCTTTATTACATATTATTATACTAGACGAAA 30579 Query 164747 TAGATGCTCTTTGCAAAAAACGTGGTGAT---------AATATTA------TTCATGATG 164791 | |||||| | || | | || | || || | || || | ||||| Sbjct 30580 TTGATGCTATATGTAGACAAAGAGGAAATTCCTTTTCCAGTAGTACTGGAGTAAATGATA 30639 Query 164792 CAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAAT-CCTTAAATAATATTTTA 164850 | || |||||||| ||||| ||||| ||||| || |||| ||||||||||| | Sbjct 30640 GTATAGTAAATCAGTTACTTTCCAAAATTGATGGAGT-GAATAGTTTAAATAATATACTT 30698 Query 164851 ATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGA 164910 || | |||||||| || | ||| | |||||||| || || ||| ||||||| | Sbjct 30699 CTTATCGGTATGACAAATAGGATAGATCTTATTGATGAAGCATTGTTAAGACCTGGAAGG 30758 Query 164911 TTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAA 164970 || ||||| | || |||||| | || | || |||||| | ||||||| |||||| Sbjct 30759 TTTGAATTACATATTGAAATATCTCTTCCAAATAAGGAAGGAAGAATTCAAATATTAAAA 30818 Query 164971 GTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAA 165030 | ||| || |||| | || ||| |||| ||| ||||| || || | || Sbjct 30819 ATACATACAAAAAATATGAGAAAAAGTAATAAATTAAGTCCAGATGTTAATATAGAAGAA 30878 Query 165031 ATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 |||||| |||| |||| | ||||| ||| | || || |||||| || Sbjct 30879 TTAGCTGAAAAAACACCTAATTTTTCAGGTGCAGAAATTGAAGGTTTAGTACGA 30932 >seq49 Length=89902 Score = 125 bits (138), Expect = 9e-24 Identities = 234/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 6896 CTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATC 6955 ||||||||| | || || || | || || || || | ||| || || ||||| | | Sbjct 6985 CTTGAGCAAGCATGTAGGTGAAAATTGAGTAGGAGGCAATATTGAAGGGAACACCAAGAC 6926 Query 6956 CCATATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAGCATAAAAT 7014 | | ||| |||| |||||| ||| ||| ||||| | || | | ||||||| Sbjct 6925 CTAAATCACAAGATCGTTGATA-CATGATACATGATAATTTCCCATCGAAAATATAAAAT 6867 Query 7015 TGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCA 7074 || || || | |||||| || ||||| | | ||| | ||| | |||||| ||| Sbjct 6866 TGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCCAGATCCTTTACATTCCATGCA 6807 Query 7075 GTCATTAAAATACGTCTATCATTTGG---ATTTGTTTTTAATTTTGTTATAATTATTTGT 7131 || | ||| | |||| |||| |||| || | || ||| ||||| ||| | Sbjct 6806 CACAAAATAATTCTTCTACTTGTTGGTTCATTTTTTATCAAATTT---ATAATATTTTTT 6750 Query 7132 AATTGATCTATACCCTGACCTTCATAATTAGTATGACA-ATTTATATAATTAGCTCCAAA 7190 | ||||| || || | | |||||||||| || ||| |||| |||| | ||||||||| Sbjct 6749 AGCTGATCAATTCCTTTATTTTCATAATTATCAT-ACATATTTGTATATTCAGCTCCAAA 6691 Query 7191 ATGTCTCCATTGAAACCCATAAATAGGACCTAAATCA 7227 ||||||||||||||| ||||||||||||||||||||| Sbjct 6690 ATGTCTCCATTGAAAACCATAAATAGGACCTAAATCA 6654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595846049774400