Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq176 143 2e-29 >seq176 Length=118070 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCT 94839 |||||||| ||||| || || ||||| ||||||||||| || || | ||||||||| | | Sbjct 109437 CCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGAT 109378 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || | || | ||||| | |||||||| |||| ||||||||||| ||||| || || Sbjct 109377 AATGTTCTTCCA-TCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 109319 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||| || || | |||||| ||||| || | | ||||| | || || Sbjct 109318 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 109259 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||| ||||| || | ||||||||||| |||||||| Sbjct 109258 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCAT 109211 Score = 134 bits (148), Expect = 1e-26 Identities = 176/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| | |||||||| ||||| || || ||||| ||||||||||| || || | Sbjct 109912 AAAAAATTAAAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGAT 109853 Query 94828 GTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||||||||| | | || | || | ||||| | |||||||| | || |||||||||| Sbjct 109852 GTTATAATCCGATAATGTTCTTCCA-TCCTCTAATTGTTTTCCTGCGAATATTAATCTTT 109794 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||| || ||||| ||||| || || | |||||| ||||| || | | ||| | Sbjct 109793 GCTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTAT 109734 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | |||||||| ||||| || | |||||||| || ||||||| Sbjct 109733 CCGATGATTCTACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCA 109674 Query 95007 T 95007 | Sbjct 109673 T 109673 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-G 94837 |||||||||| ||||| ||||| ||||||| ||||| || || || | ||||||||| | Sbjct 109670 CTCCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCG 109611 Query 94838 CTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || | || | || |||| |||||||| |||| ||||||||||| ||||| || Sbjct 109610 ATAATGTTCTTCCA-TCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGT 109552 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 ||||| ||||| || || | |||||| ||||| || | | || || | | || Sbjct 109551 GGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCA 109492 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||||| ||||| || | |||||||| || |||||||| Sbjct 109491 ACATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCAT 109442 Score = 111 bits (122), Expect = 1e-19 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| ||||| || || || || || |||||||||||||| | ||||||||| Sbjct 109206 CCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCA-- 109149 Query 94841 ATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| |||| | ||| |||| || ||||| |||| || |||||||||||||| || | Sbjct 109148 ATAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTG 109089 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 | || ||||| || || | |||||| ||||| || Sbjct 109088 GTATTCCTTCCTTATCCTGAATTTTCGCCTTTAC 109055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448271676918240