Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq176 113 4e-20 >seq176 Length=118070 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| ||||| || || ||||| | ||||| |||| |||||||| Sbjct 109210 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 109269 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | || || || ||| || || ||||| || || |||||||| Sbjct 109270 AGACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109329 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||||||| | || | | || |||||| | || |||| || ||| | | | || |||| Sbjct 109330 ACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAG-AACATTATCGGATTATA 109388 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||||||||| | || | ||| | || | |||||||| Sbjct 109389 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 109437 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| || || ||||| | |||||| | || |||||||| Sbjct 109672 AATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATC 109731 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || ||| | || || || ||| || || ||||| || || |||||||| Sbjct 109732 GGATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109791 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACTATA 26946 |||||| | || | || || |||||| | || |||| |||| | | | || | |||| Sbjct 109792 GCAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAA-CATTATCGGATTATA 109850 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||||||||| | || | ||| | || | |||||||| Sbjct 109851 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 109899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| ||||| ||||| | |||||| | || | || || Sbjct 109441 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 109500 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || ||| | || || || ||| || || ||||| || || |||||||| Sbjct 109501 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109560 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||||||| | || | | || |||||| | ||||||| || ||| | | | || |||| Sbjct 109561 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAG-AACATTATCGGATTATA 109619 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||| || ||||| ||||| | || | || | || | ||||||||| Sbjct 109620 ACATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGGA 109669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478641554252480