Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq176 111 1e-19 seq177 104 2e-17 >seq176 Length=118070 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| ||||| ||||| | || ||| | || || ||| || Sbjct 109441 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 109500 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || || || ||| || || ||||| || || |||||||| Sbjct 109501 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109560 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| ||| | || | | || || ||| | ||||||| || ||| | | | ||||||| Sbjct 109561 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAG-AACATTATCGGATTATA 109619 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || ||||| ||||| | || ||||||||| |||| ||||||||| Sbjct 109620 ACATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGGA 109669 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || || ||||| | || || |||| || || | Sbjct 109210 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 109269 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | || || || ||| || || ||||| || || |||||||| Sbjct 109270 AGACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109329 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| ||| | || | | || || ||| | || |||| || ||| | | | ||||||| Sbjct 109330 ACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAG-AACATTATCGGATTATA 109388 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || ||||||||||| | || ||||| ||| |||| |||||||| Sbjct 109389 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 109437 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAG 24077 || ||| |||| ||| | || || ||| | || || || ||| | || || || Sbjct 109007 GGTAAAACGATCACCTTGGATGTTGAGTCATCGGATACGATTGAGAATGTAAAGGCGAAA 109066 Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 ||| || || ||||| ||||| || ||||| || ||| |||| | | || |||||| Sbjct 109067 ATTCAGGATAAGGAAGGAATACCACCTGATCAGCAAAGATTGATATTTGCGGGAAAGCAA 109126 Query 24138 CTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTA 24197 | ||||||| ||||| | ||||||||||| ||||| |||||||| | |||||| Sbjct 109127 TTGGAAGATGGCAGAACATTATTGGATTATAACATCCAAAAGGAATCTACCTTACATTTA 109186 Query 24198 GTGTTAAGATTGAGAGGAGG 24217 || ||| |||| |||||||| Sbjct 109187 GTCTTACGATTAAGAGGAGG 109206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| || || ||||| | || ||| | || || || | Sbjct 109672 AATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATC 109731 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || || || ||| || || ||||| || || |||||||| Sbjct 109732 GGATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109791 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATA 24168 || ||| | || | || || || ||| | || |||| |||| | | | || |||||| Sbjct 109792 GCAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAA-CATTATCGGATTATA 109850 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 |||| || ||||||||||| | || ||||| ||| |||| |||||||| | |||| Sbjct 109851 ACATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGGTTTTTAAT 109907 >seq177 Length=178137 Score = 104 bits (114), Expect = 2e-17 Identities = 187/270 (69%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 133008 TTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAG 133067 |||| |||||| ||||||||||| || | || ||||||| ||||| || | | Sbjct 42667 TTTCATATAATTTTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTG 42608 Query 133068 GACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCC 133127 ||||||| || | ||| |||| | | | || |||||||| || || || || Sbjct 42607 GACACATTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCC 42548 Query 133128 ACATGGCAAAAAATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAG 133186 | | ||| |||||||||| | ||| ||| || ||||| || |||| | |||| Sbjct 42547 AAACAGCATAAAATAAATCTCTAGCTCTTAAT-TCTTCTTTACCATGATTTTTTCTCAAA 42489 Query 133187 TCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTC 133246 || | ||| ||| ||||||| |||||| || || |||||||| || || | ||||| Sbjct 42488 TCTAGAAATTCAAATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTT 42429 Query 133247 CTTTTACCT---CCCTGATCCACATGTCTA 133273 ||||| ||| || ||||| |||| |||| Sbjct 42428 CTTTTTCCTCCACCTTGATCTACATATCTA 42399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429917744380020