Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq187 246 3e-60 >seq187 Length=410067 Score = 246 bits (272), Expect = 3e-60 Identities = 593/886 (67%), Gaps = 25/886 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| |||| || || || |||| ||||||||| || ||||| ||||||| Sbjct 75446 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 75387 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||| || ||| || | | | | ||||| || || | || | |||| | | | Sbjct 75386 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAA-ATTTTTGAACAAC 75328 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 | | | | | ||||||| ||| ||||||||||| || ||||||||||| || ||| Sbjct 75327 CTAAACATTCTAATAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTTGAAT 75268 Query 92967 TCATTCCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 |||| || | ||| | | |||||||| || | |||| | || | | |||| Sbjct 75267 TCATCCCAATTAAGTCACA-AGGTAGAGATTCACATATGAAAGACCTTTCAACTTCAACA 75209 Query 93026 GCTTCTTT--CAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGT 93083 |||||||| ||| |||| || | || || | |||| |||| | | | | || | | Sbjct 75208 GCTTCTTTTACAATATTTTTAACAA-CTTCT-TCTGGTAGTTTATTTTCTAATAAACTAT 75151 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 | |||| || ||| || |||||||| ||||| |||| || | |||||||| | Sbjct 75150 ATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAA 75091 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | || | || |||| | |||| || | |||||| || | | ||||||||| Sbjct 75090 AGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACCAC 75031 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGG 93260 ||| | ||||||||| || |||| ||| ||||| | ||| ||||| ||||| Sbjct 75030 TAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAATGAATTTGTAT 74971 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 ||| ||||||||| |||||| ||||| ||||||| |||| ||| Sbjct 74970 CATTT------ATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTT 74917 Query 93321 CGATAGCGTTAAATAGGTAATCT---CGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 | ||||| | ||||| ||| | || || | |||| ||| || | || || | Sbjct 74916 CAATAGCATGAAATA---AATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTATAA 74860 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 | | ||| |||| ||||| | ||| |||| ||| ||||| ||| ||| || | Sbjct 74859 GTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTT 74800 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 ||||||| || || || || ||| ||||| | | | |||||| ||||||| Sbjct 74799 TAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATAC 74740 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 |||| ||||||||||| || |||| ||| || |||||||| || |||| || || | Sbjct 74739 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATTTA 74680 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 || || |||| || ||| |||| | ||| | |||||| | |||||||| |||| Sbjct 74679 ATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATG 74620 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGG 93663 ||||||||||||| || | |||||| | || ||||| |||||| Sbjct 74619 CTTCTGCTTTTTTATAAAAATCCCAAACATCGGGATATAAAATTGG 74574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556836548712160