Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq176 201 2e-46 >seq176 Length=118070 Score = 201 bits (222), Expect = 2e-46 Identities = 174/216 (81%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || ||||||| || || ||||| |||||||||||||| || | ||| || ||| Sbjct 109425 CGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCA 109366 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || || || ||||| | ||||||||| ||||||||||| |||||||| Sbjct 109365 TCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTA 109306 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| || ||||| || ||| |||||||||| ||||||||| || | |||||| Sbjct 109305 TCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGATG 109246 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || |||||||| | ||| || || |||||||||||| Sbjct 109245 GTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 109210 Score = 196 bits (216), Expect = 9e-45 Identities = 173/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || ||||||| || || ||||| |||||||||||||| || | ||| || ||| Sbjct 109887 CGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCA 109828 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || || |||||||| | |||||| || ||||||||||| |||||||| Sbjct 109827 TCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTTA 109768 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| || ||||| || ||| || || || | ||||||||| || ||||||||| Sbjct 109767 TCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTACATCTAAGGTGATG 109708 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || | ||| || ||||||||||||||| Sbjct 109707 GTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 109672 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | | || || || ||||| || || |||||||| |||||||||||||| || Sbjct 109669 TCCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGA 109610 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | ||| || |||||||| || || || || || ||||| | ||||||||| |||||||| Sbjct 109609 TAATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 109550 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| |||||||| |||||||| || ||||| || ||| || || || | || || || Sbjct 109549 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAAC 109490 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||||||| ||||| || | ||| || ||||||||||||||| Sbjct 109489 ATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 109441 Score = 136 bits (150), Expect = 7e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || || |||| || || || ||||||||||||||||| | | ||| || ||| Sbjct 109194 CGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAATAATGTTCTGCCA 109135 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || ||||| || || ||||| | |||||| || || ||||| || |||||||| Sbjct 109134 TCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGGTATTCCTTCCTTA 109075 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || ||||| || ||||| || ||| || || || | ||| || || ||||||||||| Sbjct 109074 TCCTGAATTTTCGCCTTTACATTCTCAATCGTATCCGATGACTCAACATCCAAGGTGATC 109015 Query 68427 GTTTTTCC 68434 ||||| || Sbjct 109014 GTTTTACC 109007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921582263344480