Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq176 127 5e-24 >seq176 Length=118070 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| ||||| || | | || | ||| || ||||||||||||||||| || Sbjct 109402 TTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAA 109343 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| ||| |||||||| ||||| || |||||||| || || || Sbjct 109342 TATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATT 109283 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || |||||||| ||||||||||| ||||| || |||| || || || Sbjct 109282 CTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCAC 109223 Query 288462 GAATATCTGCATT 288474 |||||||||||| Sbjct 109222 AAATATCTGCATT 109210 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| ||||| || | | || | ||| || |||||||||||||||||||| Sbjct 109864 TTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAA 109805 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| ||| |||||||| ||||| || |||||||| || || || Sbjct 109804 TATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATT 109745 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| |||||||| || | ||||| ||||| || |||| || || || Sbjct 109744 CTCAATAGTATCCGATGATTCTACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCAC 109685 Query 288462 GAATATCTGCATT 288474 ||||||||||||| Sbjct 109684 GAATATCTGCATT 109672 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| ||||| || | | || | ||| ||||| |||||||||||||| || Sbjct 109632 TCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAAT 109573 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | |||||| ||| |||||||| ||||| || |||||||| || || || Sbjct 109572 ATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTC 109513 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || | ||||| ||||| || || | || || ||| Sbjct 109512 TCAATCGTATCCGAGGACTCAACATCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACG 109453 Query 288463 AATATCTGCATT 288474 |||||||||||| Sbjct 109452 AATATCTGCATT 109441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179601741702152