Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq176 104 2e-17 seq129 87.8 2e-12 >seq176 Length=118070 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| || ||||| |||||||| | ||| | ||| || |||||||||||| Sbjct 109407 GTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCT 109348 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || |||| |||| ||| || || || ||||| ||||| |||||||||||||| || Sbjct 109347 GCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTCGCCTTT 109288 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | |||||| || || || || ||||| || | || || || || | ||| Sbjct 109287 ACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTCTTTCCCGTCAAGGTT 109228 Query 45324 TTTACAAAAATTTGCAT 45340 || ||||| || ||||| Sbjct 109227 TTCACAAATATCTGCAT 109211 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 ||||||| ||||| || || || || ||||| |||||||| | ||| | ||| Sbjct 109653 AACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCT 109594 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||||||||||||||| |||| |||| ||| || || || ||||| ||||| |||||| Sbjct 109593 TCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCT 109534 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||||||| || | || | || || || ||||| || || | || | || Sbjct 109533 TGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACATCCAAGGTGATGGTC 109474 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||||| || || || ||||| Sbjct 109473 TTTCCTGTTAAGGTTTTCACGAATATCTGCAT 109442 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | || |||||||||||||| |||||||| | ||| | ||| Sbjct 109191 AAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAATAATGTTCTGCCATCT 109132 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 |||||||| ||||| || ||||||||| |||||| || || || || ||||| ||||| Sbjct 109131 TCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGGTATTCCTTCCTTATCC 109072 Query 45249 TGAATTTT 45256 |||||||| Sbjct 109071 TGAATTTT 109064 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| || ||||| |||||||| | ||| | ||| || |||||||||||| Sbjct 109869 GTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCCTCTAATTGTTTTCCT 109810 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| |||| |||| |||||| || || ||||| ||||| |||||||||||||| Sbjct 109809 GCGAATATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTT 109757 >seq129 Length=280093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 45140 CAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTT 45199 ||| || ||||| || |||||||| ||||| | | ||||| | || |||||||| Sbjct 42045 CAGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTT 41986 Query 45200 TCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 45259 ||| || | || |||| ||| | ||| | ||||| |||| ||||| ||||||||| Sbjct 41985 TCCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGC 41926 Query 45260 TTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 ||| || ||| | || || || || || || || | || ||||| || ||| Sbjct 41925 TTTAATATTTTCAATTGTATCTACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTAA 41866 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 |||||||| || |||||||| Sbjct 41865 TGTTTTTACGAATATTTGCAT 41845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451983515260640