Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq177 168 8e-37 >seq177 Length=178137 Score = 168 bits (186), Expect = 8e-37 Identities = 850/1345 (63%), Gaps = 26/1345 (2%) Strand=Plus/Plus Query 111896 TATTAGAGGTACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACG 111954 ||| ||||| || |||||| ||| | || |||| | |||||| | | || ||||||| Sbjct 42333 TATAAGAGGAACTAATGGTATTTCAAACGG-ATTAGTACCAATGTTAAGAGTTTTTAACG 42391 Query 111955 CCACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATC 112011 ||||| | |||||| | |||| ||| | | || ||||| | ||||| ||| Sbjct 42392 ATACAGCTAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATA 42451 Query 112012 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATG 112071 |||| |||||||| | || || | || || || || ||| | || || ||| | | Sbjct 42452 TTGAACCATGGCATTCAGACATATTTGAATTTCTAGATTTGAGAAAAAATCATGGTAAAG 42511 Query 112072 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 112131 | || | | ||| | || | ||| | ||| |||||||| | || ||||| | Sbjct 42512 AAGAATTAAGAGCTAGAGATTTATTTTATGCTGTTTGGGTTCCAGATTTATTTATGAAAA 42571 Query 112132 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG 112191 ||||| |||| | | |||||| || | | |||||| | | || ||| | | Sbjct 42572 GAGTTAAGGAAAATAAAAATTGGACTTTAATGTGTCCAAATGAATGTCCAGGTTTGAGTG 42631 Query 112192 ATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGA 112251 | | |||||| || |||||| | || |||||| || ||||||| | | | Sbjct 42632 AAACATGGGGTGAAGAATTTGAAAAATTATATGAAAAGTATGAAGAAGAAAATTTAGGAA 42691 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 || || |||| ||| | ||| |||||| | | ||| | || || | Sbjct 42692 AAAAAACTGTATTAGCTCAAGATTTATGGTTTGCTATTTTACAAAGTCAGATTGAAACAG 42751 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 || |||||| ||| | |||||||| | ||||| || ||||||||| ||||| | Sbjct 42752 GTGTACCATACATGTTGTACAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATTTAG 42811 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 || || || || || || || ||||| | |||| |||| |||||| Sbjct 42812 GTACAATTAAATGTAGTAATCTATGCTGTGAAATAATAGAATATACATCACCAGATGAAG 42871 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491 ||||| |||||| | ||||| || ||| | || | ||| || |||| | ||| Sbjct 42872 TTGCTGTTTGTAACTTAGCATCTATTGCTTTATGTAAATTTGTAGACACAGAAAAAAAAG 42931 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 ||| ||| | ||||| | | ||| |||| |||| | | || | ||| || ||| | Sbjct 42932 TTTTTAATTTTAAAAAATTATATGAAATTACAAAAATTATTACGAGAAATTTAGACAAAA 42991 Query 112552 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 ||||||| ||||||| ||| || ||| || ||| | ||| || | |||||| | | Sbjct 42992 TTATTGAAAGAAATTATTATCCTGTTAAGGAAGCTGAGAGATCAAACAGGAGACATAGAC 43051 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTG 112671 |||| || | ||||| ||||| | || || ||| || |||| | | | | | Sbjct 43052 CAATAGGAATTGGTGTACAAGGATTAGCTGACACATTTATGCTTTTAAGATATCCTTACG 43111 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || || ||||| || ||| | ||| | || ||||| || ||||| | || || Sbjct 43112 AATCAGATGAAGCAAAAGAATTAAATAAAAGAATTTTTGAAACTATGTACTATGCTGCAT 43171 Query 112732 TTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | || | | ||| || || | || |||| ||||||| | | ||| ||| || Sbjct 43172 TAGAAATGTCTATGGAATTAGCTAAAATTTATGGGAAATATGAATCTTATGAAGGTAGTC 43231 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG------GAAGGTGAGACCAAGCTTC 112845 ||||| ||||| | ||||| |||||||||||| ||| ||| | ||| Sbjct 43232 CAGCTAGCCAAGGTATTCTTCAGTTTGATATGTGGAATATCAAAGTTGATAACAA---AT 43288 Query 112846 ACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT 112905 ||| | ||| | | || || ||| || || | | || || | | | || || Sbjct 43289 ACTGGAATTGGAATGAACTTAAAGAAAAAATTAAAAAACATGGACTAAGGA--ATTCCTT 43346 Query 112906 --TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 112963 | | ||||| ||||| || || || || ||||||| || || || ||||||| || Sbjct 43347 ACTTTTAGCACCTATGCCTACTGCATCTACTTCACAAATATTAGGAAACAATGAATCTTT 43406 Query 112964 TGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGT 113023 |||||| ||||| | || || || |||||| ||| ||||| || | |||| Sbjct 43407 TGAACCATACACTAGCAATATTTACTACAGAAGAGTACTCAGTGGAGAATTCTTCGTTGT 43466 Query 113024 CAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGA---A 113080 ||| ||| | | | ||| | || ||| |||||| | || |||| | Sbjct 43467 CAATCCTCATTTACTTAAAGACTTATTCGATCGTGGACTCTGGGATGAAGACATGAAACA 43526 Query 113081 GGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCC-AGATGAAA 113139 | || || | | ||| || |||| |||| || || || ||| || Sbjct 43527 ACAACTTATTGCTCACAATGGTAGT---GTTCAGTATATCAGTGAAATACCTAGA-GACC 43582 Query 113140 TTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCG 113199 ||||| | | ||| || ||||||||||||||| ||| | |||| || ||||||| Sbjct 43583 TTAAGGAACTATACAAAACCGTTTGGGAAATCAAGCAAAAGAACATCATCGATATGGCCG 43642 Query 113200 CAGATCGTGGTCGCTTCATTGATCA 113224 | ||||||||| ||||||||||| Sbjct 43643 CTGATCGTGGTGCTTTCATTGATCA 43667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620715366668480