Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq177 95.1 1e-14 >seq177 Length=178137 Score = 95.1 bits (104), Expect = 1e-14 Identities = 352/544 (65%), Gaps = 17/544 (3%) Strand=Plus/Minus Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 ||||||| | || ||||| ||| |||||| || || || | ||||| ||| Sbjct 43469 TTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAGTAAATATTGCTAGTGTATGGT 43410 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 ||||| ||||||| || || || ||||||| || || || || ||||| ||||| | Sbjct 43409 TCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCAGTAGGCATAGGTGCTAAA 43350 Query 106016 A--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 106073 | || || | | | || || | || || || ||| || || ||| ||| | Sbjct 43349 AGTAAGGAAT--TCCTTAGTCCATGTTTTTTAATTTTTTCTTTAAGTTCATTCCAATTCC 43292 Query 106074 AGTTGAGCTTGGTTTCACCTTC------CCACATATCAAATTGAAGCACCCCTTGGGACG 106127 ||| ||| | ||| ||| |||||||||||| ||||| | |||||| | Sbjct 43291 AGTAT---TTGTTATCAACTTTGATATTCCACATATCAAACTGAAGAATACCTTGGCTAG 43235 Query 106128 TGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCC 106186 ||| ||| ||| | | ||||| || | || ||| ||||| | || | Sbjct 43234 CTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAGCTAATTCCATAGA-CATT 43176 Query 106187 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 106246 || | | || | ||||| |||||||| || | ||| | || || ||||||||| Sbjct 43175 TCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAATTCTTTTGCTTCATCT 43116 Query 106247 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 || || | | || | | | |||||| || || | ||||| ||||| | || Sbjct 43115 GATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCTAATCCTTGTACACCAATTCCT 43056 Query 106307 ATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 106365 || ||||| |||| | | || || || || || || ||| |||||| ||||||| || Sbjct 43055 ATTGGTCTATGTCTCCTGTTTGATCTCTC-AGCTTCCTTAACAGGATAATAATTTCTTTC 42997 Query 106366 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 106425 ||| | | || || |||| | |||| ||| ||||| ||||||| | ||||| | ||| Sbjct 42996 AATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATTTCATATAATTTTTTAAAATT 42937 Query 106426 AAAA 106429 |||| Sbjct 42936 AAAA 42933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589955106336160