Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq176 132 1e-25 seq129 102 2e-16 >seq176 Length=118070 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| || || |||||||| || || || ||||| | | ||||| |||||| Sbjct 109653 AACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCT 109594 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || || ||||| || || | || |||||| || || ||||| ||||| || ||| Sbjct 109593 TCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCT 109534 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || |||||||| || ||||| || || || | ||| | ||| Sbjct 109533 TGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACATCCAAGGTGATGGTC 109474 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| || ||||| ||||| | |||||| Sbjct 109473 TTTCCTGTTAAGGTTTTCACGAATATCTGCATT 109441 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | ||| || ||||| || || || ||||| | | ||||| ||||| Sbjct 109884 AAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCC 109825 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || || |||||||| || | || ||| || || || ||||| ||||| || ||| Sbjct 109824 TCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGGTGGAATTCCTTCCTTATCT 109765 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || |||||||| || ||||| ||| || || | ||| | ||| Sbjct 109764 TGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTCTACATCTAAGGTGATGGTC 109705 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||||||| ||||| ||||| | |||||| Sbjct 109704 TTTCCTGTCAAGGTTTTCACGAATATCTGCATT 109672 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | ||| || ||||| || || || ||||| | | ||||| ||||| Sbjct 109422 AAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGATAATGTTCTTCCATCC 109363 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | || || ||||| || || | || |||||| || || ||||| ||||| || ||| Sbjct 109362 TCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGAATTCCTTCCTTATCT 109303 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || |||||||||||||| || ||| || || || || | ||| Sbjct 109302 TGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTACATCGAGCGTGATGGTC 109243 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| ||||| ||||| || || | |||||| Sbjct 109242 TTTCCCGTCAAGGTTTTCACAAATATCTGCATT 109210 >seq129 Length=280093 Score = 102 bits (112), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 194941 AGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTA 195000 |||||||| ||||| || ||||||||||| | |||| | ||| ||| | || || Sbjct 42044 AGAGTGGATTCTTTCTGGATATTGTAATCATTTAAAGTTTTTCCACATTCTAATTGTTTT 41985 Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 || || || || | || ||||| ||| | ||||| |||| || || ||||||||| Sbjct 41984 CCCGCAAAAATTAATCTTTGTTCGTCGAGGGGAATTACTTCCTTATCCTGAATTTTTGCT 41925 Query 195061 TTGACGTTCTCAATGGTGTCCGAACT--TTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || | || ||||| || || ||| ||| || ||||||| || || ||||| | | Sbjct 41924 TTAATATTTTCAATTGTATCT--ACTGATTCAACCTCAAGGGCAATTGTTTTTCCCCTTA 41867 Query 195119 AAGTTTTTACGAACACTTGCATTTATG 195145 | ||||||||||| | |||||||| || Sbjct 41866 ATGTTTTTACGAATATTTGCATTTTTG 41840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109432074128228