Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq177 538 4e-148 seq187 304 1e-77 >seq177 Length=178137 Score = 538 bits (596), Expect = 4e-148 Identities = 1154/1714 (67%), Gaps = 56/1714 (3%) Strand=Plus/Minus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||||| || ||||| | |||||| |||||||| | || | |||| || || Sbjct 43668 CTGATCAATGAAAGCACCACGATCAGCGGCCATATCGATGATGTTCTTTTGCTTGATTTC 43609 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAGA 47239 ||| || ||||| || | || |||| |||| || | | | | || |||| | Sbjct 43608 CCAAACGGTTTTGTATAGTTCCTTAAGGTCTCTAGGTATTTCACTGATATACTGAACACT 43549 Query 47240 TCCTCCgttttctataattttgttttttaat-tcatttgaccaaagttttcgttcagtta 47298 || || | |||| || ||| ||| || || | ||| ||| || || || Sbjct 43548 ACCATTGTGAGCAATAAGTT-GTTGTTTCATGTCTTCATCCCAGAGTCCACGATCGAATA 43490 Query 47299 atgtttttaaA-AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTA 47357 | || ||||| | ||||||||| |||| ||||||||| |||||||| | | Sbjct 43489 A-GTCTTTAAGTAAATGAGGATTGACAACGAAGAATTCTCCACTGAGTACTCTTCTGTAG 43431 Query 47358 TATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGAT 47417 || ||||| || || |||||||| | ||||||||| ||||| || ||||| | ||| ||| Sbjct 43430 TAAATATTGCTAGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGAT 43371 Query 47418 GCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNN 47477 || |||||||| | ||| | | |||| ||| |||| ||||| ||||| || | Sbjct 43370 GCAGTAGGCATAGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCT 43311 Query 47478 NNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAAC------ATTCCAAAAATCATAT 47531 ||||||| ||| || || | | |||| |||||| | |||| | Sbjct 43310 TTAAGTTCATTCCAATTCCAGT-ATTTGTT--ATCAACTTTGATATTCCACATATCAAAC 43254 Query 47532 TGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTA 47591 |||||||| |||| || ||| ||| | ||| | || ||| || || | |||| Sbjct 43253 TGAAGAATACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTA 43194 Query 47592 GCGAGTTC-ACA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGT 47649 || | ||| | | || | ||| |||||| ||| || || |||||||| ||| || | | Sbjct 43193 GCTAATTCCATAGACAT--TTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTAT 43136 Query 47650 TTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCC 47708 ||| |||| || ||||| |||||| ||||||| ||||| || || Sbjct 43135 TTA-ATTCTTTTGCTTCATCTGATTCGTAAGGATATCTTAAAAGCATAAATGTGTCAGCT 43077 Query 47709 AATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGT 47768 |||||||| |||||||| || ||||||||||| | | || || ||||||||| Sbjct 43076 AATCCTTGTACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTA 43017 Query 47769 AATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATT 47828 | ||||| | ||| | || |||||||| | || | |||| Sbjct 43016 ACAGGATAATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAATTTTTGTAATT 42957 Query 47829 TCTCTTAATTTATTAAAATCAAA--CTTGTTATT---TATA-ACAAACCTATTAAGTGCT 47882 || |||||| ||||||| ||| ||| || || | | ||||| || | || Sbjct 42956 TCATATAATTTTTTAAAATTAAAAACTTTTTTTTCTGTGTCTACAAATTTACATAAAGCA 42897 Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 |||||||||| ||||| ||||| || |||| ||| ||||||| |||||||||| Sbjct 42896 ATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCACAG 42837 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCG 48002 |||||||||| |||||| || ||||| ||||||| |||||| ||||||| Sbjct 42836 CATAGATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATGAA 42777 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 || ||||| | ||| | ||| || ||||| |||||| || | |||| ||| Sbjct 42776 TCTTTGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAACCAT 42717 Query 48063 ACAGTCCT-AGCCTTTATAACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTATA 48118 | | || | ||| || |||| | | || ||| || | ||| || || ||| Sbjct 42716 AAA-TCTTGAGC---TAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATACTTTTCATA 42661 Query 48119 TAACTTCTCAAATTCATC--CCCATACACATTATCT-AACCCAGGACATTCATTAGGACA 48175 ||| || |||||||| || ||||| || || || || ||||||||||| ||||| Sbjct 42660 TAATTTTTCAAATTCTTCACCCCATGT---TTCACTCAAACCTGGACATTCATTTGGACA 42604 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||| || | ||||| | || | || ||||| ||||||||| |||||| | ||||| Sbjct 42603 CATTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAAC 42544 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 ||| ||||||||| |||| ||||| |||||| || ||| ||| || | | || || Sbjct 42543 AGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAG 42484 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 ||| || | ||| || | |||||||||||| | ||||| ||| | | ||| || ||| Sbjct 42483 AAATTCAAATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTT 42424 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || |||||||||| |||||| || |||| |||| |||||||||||||||| || | Sbjct 42423 TCCTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAA 42364 Query 48416 ACCATTTGATATACCATTGGTTC--CCGAAATATAACT----TCCAC-TAGCTCTTATAT 48468 || ||||| |||||||| |||| | | |||| | | ||||| || |||| || Sbjct 42363 TCCGTTTGAAATACCATTAGTTCCTCTTATATATGAATTCTGTCCACGTATATCTTGTAC 42304 Query 48469 TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528 | || | ||| ||||||||||| ||||| ||| | |||||| |||| | | Sbjct 42303 TGCT-------ACACCAATACCACCTGCAGTTTTACTTATCAAAGCACATTGTTTTAATG 42251 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588 | ||| |||||||||| ||| ||| || ||||| | | ||||||| ||||||| Sbjct 42250 TTTCAAAAATTCCTTCAATAGAATCTGCTTTCATACACAGCAAAAAACAAGATGACATTT 42191 Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTG 48648 | || || |||||||||||||||||||| | |||||| |||| |||| | || Sbjct 42190 GTGGTCTTGGTGTCCCTGAATTAAATAATGTTGGCGTTGCATGTGTAAAATATTTTTGTG 42131 Query 48649 ATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATA 48708 | | || | ||| ||||| | | |||| ||| | ||||||||| || |||| Sbjct 42130 ACATCAGATGATAGGTTTCTAATGCTTTTTCTAGATCATCTAAATGTATACCAATTGATA 42071 Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATG 48768 | | ||| | || || || |||||||| | ||||| ||||| || || | ||||| Sbjct 42070 CTCTCATAATCAAATGCTGTGGTCTTTCTATGATTTTATTATTAATACGTAATAAATATG 42011 Query 48769 ATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || |||| || |||||||||||||| || | ||| Sbjct 42010 ATCTTTCTAACGTTTTAAAACCAAAGTAATCGTA 41977 >seq187 Length=410067 Score = 304 bits (336), Expect = 1e-77 Identities = 601/870 (69%), Gaps = 31/870 (4%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||| | ||||||||| || || |||||||| | || || || | Sbjct 75434 TTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAGAGAAATTAA 75375 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAA 18785 ||||| ||| ||| ||||||||| || | | |||||| | ||||| |||||| Sbjct 75374 ATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACCTAAACATTCTAA 75315 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCAC-AATTCATTCCT 18843 || | | ||| |||||||||| |||||| || | ||| | ||| ||||||| || Sbjct 75314 TAATCG---ATCTGCTACAAATTCAATATACTGAGA-CATTA-ATCTTGAATTCATCCCA 75260 Query 18844 ATTAATTTAACAGGTAGTGCATCTG-TAAGAAATTCTTGTTCTATATTTACTGCCTCTGA 18902 ||||| | | |||||| | || || |||| | | ||| | | || || ||| Sbjct 75259 ATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCT-TTCAACTTCAACAGCTTCTTT 75201 Query 18903 TATAATAGAT---ACAACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAAACAT 18956 || |||| | |||||| ||||| | | || ||| || | | | | || Sbjct 75200 TACAATATTTTTAACAACT---TCTTC--TGGTAGTTTATTTTCTAATAAACT-ATATAT 75147 Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 | ||| |||||| ||||| ||| || |||||||| || | |||||| ||| || Sbjct 75146 TAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCTAAAGGT 75087 Query 19017 TAAACCAGGCA-TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075 | ||| | | | || | |||||| ||||| || |||| | || ||| || Sbjct 75086 AAGTCCATGTAATTTGTTTTGTTTTTTA-AACCAAAAAATAGCACAGAAACTACCACTAA 75028 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 | | ||||||||| || |||| || || | ||||||| || | | || ||| Sbjct 75027 ACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAAT---GAATTTGTAT 74971 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 || |||||||| ||||||| || || || || || ||| || | || |||| Sbjct 74970 CATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTATATTTTCAATAG 74911 Query 19196 AATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 || ||||| || | ||| || | | |||||| | ||| ||||| | |||||| | Sbjct 74910 CATGAAATAAATTTAAACGTTCTTTTTCATCTTTTATATAATTGTCTATAAGTAAACTAT 74851 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 | |||||||||| |||||||| | || || |||||| |||||| | | ||||||| Sbjct 74850 ATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTTTAGCTTCTG 74791 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | || || || || || ||||| | | |||||||||| ||||| |||||||||| Sbjct 74790 TAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATACCATCACTAG 74731 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCAT-CTGAGGTTAATGTATTC 19434 |||||||||||||||||||||||||||||||||| ||||||| || | ||||| | | Sbjct 74730 CTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCAT-TTAATTTTTCA 74672 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 |||| || | ||| | |||||||||| ||||||| |||||||||| || || |||||| Sbjct 74671 AAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAATGATGCTTCTGCT 74612 Query 19495 TTTTTATACATGTTCCATATATCACGATAT 19524 |||||||| | | ||| | ||| ||||| Sbjct 74611 TTTTTATAAAAATCCCAAACATCGGGATAT 74582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562084320161760