Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq187 212 7e-50 >seq187 Length=410067 Score = 212 bits (234), Expect = 7e-50 Identities = 558/838 (67%), Gaps = 29/838 (3%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||| ||||| || |||| ||| |||| ||||| ||||| ||||||| Sbjct 75446 CATAACACCAGATTTCTGATAATCAGCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTG 75387 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGT---ACTACA 36988 ||| || || ||||| ||| ||| ||||| || | | | || | || || Sbjct 75386 TAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAAATTTTTGAACAACC 75327 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | |||| | | || | ||| || |||||||| || || | | |||||| | | Sbjct 75326 TAAACATTC--TAATAATCG-ATCTGCTACAAATTCAATATACTGAGACATTAATCTTGA 75270 Query 37049 GTTTATACCAATTA-GTTTTACTG--GAATTGCATCTTGAAGAAATAGTTTTTCTATTAT 37105 || || ||||||| || | | || | || | | |||| | ||| | | | Sbjct 75269 ATTCATCCCAATTAAGTCACAAGGTAGAGATTCACAT--ATGAAAGACCTTT-CAACTTC 75213 Query 37106 TACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTT 37165 ||||| ||||| || ||||| || ||||||||| | | | || || ||| | | Sbjct 75212 AACAGCTTCTTTTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAACT 75153 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 | | | || ||| |||||| |||||| |||||||||||||| || | |||||| Sbjct 75152 ATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTCATTGCT 75093 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 |||||| | ||| | | | | |||||||| |||||| || || ||| || Sbjct 75092 AAAGGTAAGTCCATGTAATTTGTTTTGTTTTTTAAACCAAAAAATAGCACAGAAACTACC 75033 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 | ||| | ||||||||||| |||| |||||||| | | | || |||| | Sbjct 75032 ACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAAA---TGAATT 74976 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAAT-TTAACACATTCAATTGTTT 37404 |||| ||||||||| || |||| ||| |||| | ||||| | || ||| Sbjct 74975 TGTATCATTTATCCATTTTGCTGCCCAAAGTGC-TTTATTCTTAACTGCTGGTATATTTT 74917 Query 37405 CAATTGCTTTTAAGAGA---AAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 |||| || | || | | || || || |||| ||| |||||||| | || || | Sbjct 74916 CAATAGCATGAAATAAATTTAAACGTTCTTTTTCA---TCTTTTATATAATTGTCTATAA 74860 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 |||||||||| |||| || || |||||||| | ||||| ||||| ||||| Sbjct 74859 GTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGTAAAATTTTT 74800 Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||||||| | | |||||| || | ||||| | | || || ||||| ||||| | Sbjct 74799 TAGCTTCTGTAATTTGAACCTCTCTTAAAAATTTACTGGCCAAATTTTCTAATACTATAC 74740 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCATTTG 37638 |||||||||||||||| || || | |||| ||| |||||||| ||||| ||||| Sbjct 74739 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTTTCATTCTCATT-- 74682 Query 37639 ATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||||||| |||| || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 74681 -TAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCTGTCCAAAA 74625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592291004603360