Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq176 109 5e-19 seq129 96.9 3e-15 >seq176 Length=118070 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| ||||| || ||||| || ||||| || ||| ||| | || Sbjct 109210 AATGCAGATATTTGTGAAAACCTTGACGGGAAAGACCATCACGCTCGATGTAGAATCATC 109269 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| ||||| || || || ||| | || ||||| Sbjct 109270 AGACACCATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109329 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || |||||||| || ||| | ||| | | |||||||| Sbjct 109330 ACAAAGATTAATATTTGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAA 109389 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| || |||||||||||| | ||| | || ||| ||||| ||||||| Sbjct 109390 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 109437 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| ||||| || ||||| ||||| || || ||||| ||| || || | || Sbjct 109441 AATGCAGATATTCGTGAAAACCTTAACAGGAAAGACCATCACCTTGGATGTTGAGTCCTC 109500 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | || | ||| ||||| || || || ||| | || ||||| Sbjct 109501 GGATACGATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109560 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || ||||||||||||||| | ||| | | |||||||| Sbjct 109561 ACAAAGATTAATATTTGCAGGAAAACAATTGGAAGATGGAAGAACATTATCGGATTATAA 109620 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| || ||||| ||||| |||||| | || ||| ||||| ||||||| Sbjct 109621 CATCCAGAAAGAGTCTACCCTGCACTTAGTGTTACGATTAAGAGGAGG 109668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| ||||| || ||||| || || || || ||||| ||| || ||| | || Sbjct 109672 AATGCAGATATTCGTGAAAACCTTGACAGGAAAGACCATCACCTTAGATGTAGAATCATC 109731 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||| || || || ||| | || ||||| Sbjct 109732 GGATACTATTGAGAATGTAAAGGCGAAAATTCAAGATAAGGAAGGAATTCCACCCGATCA 109791 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || ||| | || || || || |||||||| || ||| | ||| | | |||||||| Sbjct 109792 GCAAAGATTAATATTCGCAGGAAAACAATTAGAGGATGGAAGAACATTATCGGATTATAA 109851 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| || |||||||||||| | ||| | || ||| ||||| ||||||| Sbjct 109852 CATCCAGAAAGAATCTACTTTACACTTAGTCTTACGATTAAGAGGAGG 109899 >seq129 Length=280093 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||||||||||| ||||||||||||| ||| ||||| ||| || || ||| | Sbjct 41841 AAAAATGCAAATATTCGTAAAAACATTAAGGGGAAAAACAATTGCCCTTGAGGTTGAATC 41900 Query 28610 TTCAGAGACGGTGGCCGAT-CTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 ||| || | | || | ||||||||| || || || || | | | ||| | | Sbjct 41901 AGTAGATACAATTGAAAATATTAAAGCAAAAATTC-AGGATAAGGAAGTAATTCCCCTCG 41959 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 | |||| ||| | || |||||||| |||||||| ||| | |||||| | |||| Sbjct 41960 ACGAACAAAGATTAATTTTTGCGGGAAAACAATTAGAATGTGGAAAAACTTTAAATGATT 42019 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 | || || || |||||||| |||||| || ||||| Sbjct 42020 ACAATATCCAGAAAGAATCCACTCTGAACTTGGTA 42054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425386736780436