Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq177 329 2e-85 >seq177 Length=178137 Score = 329 bits (364), Expect = 2e-85 Identities = 991/1502 (66%), Gaps = 70/1502 (5%) Strand=Plus/Minus Query 25054 AGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCAT 25113 |||| ||||||||||| ||||||| |||||||| ||||| ||||||||||| || ||||| Sbjct 43419 AGTGTATGGTTCAAAAGATTCATTGTTTCCTAATATTTGTGAAGTAGATGCAGTAGGCAT 43360 Query 25114 TAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATC 25173 ||||| | || ||||| || | |||| ||| ||| | || ||| | || || Sbjct 43359 AGGTGCTAAAAGTAAGGAATTCCTTAGTCCATGTTTTTTAATTTTTTCTTTAAGTTCATT 43300 Query 25174 CCAAT-CTA--AATTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAA 25230 ||||| | | | || ||||| | | ||||| || ||| ||||| || || || Sbjct 43299 CCAATTCCAGTATTTGTTATCAACTTTGATATTC----CACATA--TCAAACTG-AAGAA 43247 Query 25231 TCCACTTGCT-GCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATAT 25289 | | | ||| || || ||| ||| | |||||| || | || | || | | Sbjct 43246 TACCTTGGCTAGCTGGACTACCTTCATAAGATTCATATTTCCCATAAATTTTAGCTAATT 43187 Query 25290 CTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACT 25349 | | || ||||| |||||||| |||||| |||||||||| ||| ||||| | Sbjct 43186 CCATAGACATTTCTAATGCAGCATAGTACATAGTTTCAAAAATTCTTTTATTTAATTCTT 43127 Query 25350 TAGCTTTTTCTCCATCGAAAGCAATTTCCATTAAGGCG--AACGTATCTGCTAATCCCTG 25407 | |||| ||| ||| ||| | | | | || || || || || |||||||| || Sbjct 43126 TTGCTTCATCTGATTCGTAAGGATAT--CTTAAAAGCATAAATGTGTCAGCTAATCCTTG 43069 Query 25408 AACTCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATA 25467 || || | ||| | ||| | |||| | | || | |||||| ||| ||||| Sbjct 43068 TACACCAATTCCTATTGGTCTATGTCTCCTGTTTGATCTCTCAGCTTCCTTAACAGGATA 43009 Query 25468 GAAATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAA 25527 ||||| | || || | || |||| ||| | | || ||| |||| |||| | Sbjct 43008 ATAATTTCTTTCAATAATTTTGTCTAAATTTCTCGTAATAA--TTTTTGTAATTTCATAT 42951 Query 25528 CTCAATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGC 25587 ||| | ||| ||| | | ||| | ||| | | |||||||||| ||||||| Sbjct 42950 ---AATTTTTTAAAATTAAA----AACTTTTTTTTCTGTGTCTACAAATTTACATAAAGC 42898 Query 25588 GATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGA 25646 || |||||||| ||||||||||| ||| | | || | | |||||| | || || Sbjct 42897 AATAGATGCTAAGTTACAAACAGCAACTTCAT-CTGGTGATGTATATTCTATTATTTCAC 42839 Query 25647 TACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTA----TTGCATGTATTG 25702 |||| || ||| |||| ||| || |||| ||||||||| | |||| || Sbjct 42838 AGCATAGATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACATG 42779 Query 25703 ACAATATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTC 25762 | |||||| || | ||||| ||||||||||| ||| | |||||| Sbjct 42778 A----ATCTTTGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCA 42723 Query 25763 TCCCAAAGTTCTCTCGCTTTTAC---TTTCTTTACGAAGTTACCATCAGAAACAGCTCTT 25819 ||| | ||| ||| ||| ||| ||| | || || | || | || || Sbjct 42722 AACCATAAATCTTGAGCTAATACAGTTTTTTTTCCTAAATTTTCTTCTTCATA--CT-TT 42666 Query 25820 TCGTAAAGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTG 25879 || || | || ||||||||| | | | ||| ||| || | | Sbjct 42665 TCATATAATTTTTCAAATTCTTCACCCCATGTTTCACTCAAA------CC-------TGG 42619 Query 25880 AGAATAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAAT 25939 | | | || ||||||| | |||| ||||| ||||| || |||| | | ||||||| Sbjct 42618 ACATTCAT--TTGGACACATTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAAT 42561 Query 25940 AAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGA 25999 |||||||||| ||| | ||||||||||||||||| ||||| | ||||||||| || ||| Sbjct 42560 AAATCTGGAACCCAAACAGCATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGA 42501 Query 26000 TTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCA 26059 || ||| | | ||||| || ||||| || ||||| ||||||||||| | ||| | ||| Sbjct 42500 TTTTTTCTCAAATCTAGAAATTCAAATATGTCTGAATGCCATGGTTCAATATATACTGCA 42441 Query 26060 AAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACT 26119 || ||||||||||||||||||||||||||||| ||||| || || || || |||||| Sbjct 42440 AATGATCCTTTTCTTTTTCCTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACT 42381 Query 26120 TTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG-TGCTATGAATCTTGGATCCTGT 26178 | |||||||| |||||||| |||||| || || | | || | | || || |||| Sbjct 42380 CTTAACATTGGTACTAATCCGTTTGAAATACCATTAGTTCCTCTTATATATGAATTCTGT 42321 Query 26179 CGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC--TGCA 26236 | | | ||||| || | | ||| || ||||| | || ||| | || | ||| Sbjct 42320 CCA-CGTATATCTTGTACTGCTACACCAATACCACCTG--CAGTTTTACTTATCAAAGCA 42264 Query 26237 CAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAA 26296 || | | | ||| || |||||||||| || ||| ||||||| | | |||||| Sbjct 42263 CATTGTTTTAATGTTTCAAAAATTCCTTCAATAGAATCTGCTTTCATACACAGCAAAAAA 42204 Query 26297 CAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTA 26356 ||||| || | ||| | | ||| ||||||||||||||||| || || ||||| ||| Sbjct 42203 CAAGATGACATTTGTGGTCTTGGTGTCCCTGAATTAAATAATGTTGGCGTTGCATGTGTA 42144 Query 26357 TAATATCCTTCACTCA-AAGCTGTATAAGTTTCAAGAACTTCATC--GATATTGTAATTA 26413 ||||| || || || || ||| ||||| | ||| || ||| | ||| | Sbjct 42143 AAATATTTTTGTGACATCAGATG-ATAGGTTTCTAATGCTTTTTCTAGATCATCTAAATG 42085 Query 26414 CTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCC 26473 || |||| | | ||| | || || || |||| ||| || | ||||| | Sbjct 42084 TATAC--CAATTGATACTCTCATAATCAAATGCTGTGGTCTTTCTATGATTTTATTAT-- 42029 Query 26474 GCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAA 26533 || |||| ||||| ||| ||||||| ||||| || ||||| ||||| | || ||| Sbjct 42028 TAATACGTAAT-AAATATGATCTTTCTAACGTTTTAAAACCAAAGTAATCGTAGTTAAAA 41970 Query 26534 TC 26535 || Sbjct 41969 TC 41968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253029255605300