Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq177 140 4e-28 >seq177 Length=178137 Score = 140 bits (154), Expect = 4e-28 Identities = 718/1137 (63%), Gaps = 20/1137 (2%) Strand=Plus/Plus Query 75503 GGGACAAATGGTCAATCAGATGGTATTATT-CCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || |||||| ||| | || |||| | |||||| | | || ||||||| ||||| Sbjct 42340 GGAACTAATGGTATTTCAAACGG-ATTAGTACCAATGTTAAGAGTTTTTAACGATACAGC 42398 Query 75562 GCGCTATGTAAATCAAGCGGGGCGTC---GCAAGGGGTCCATCGCGGTCTACTTGGAACC 75618 | |||||| |||||| || | | || || || | || || || | ||||| Sbjct 42399 TAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGATCATTTGCAGTATATATTGAACC 42458 Query 75619 ATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGC 75678 ||||||| | || || | || || || || || || || || ||| | ||||| Sbjct 42459 ATGGCATTCAGACATATTTGAATTTCTAGATTTGAGAAAAAATCATGGTAAAGAAGAATT 42518 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 | ||||||| | |||| | | ||| ||||||| | || ||||| | ||| | Sbjct 42519 AAGAGCTAGAGATTTATTTTATGCTGTTTGGGTTCCAGATTTATTTATGAAAAGAGTTAA 42578 Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798 ||| | | ||| || | | |||||| | | |||||| | || | Sbjct 42579 GGAAAATAAAAATTGGACTTTAATGTGTCCAAATGAATGTCCAGGTTTGAGTGAAACATG 42638 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC 75858 |||||| || |||||| | || |||||||||||| || | || || || Sbjct 42639 GGGTGAAGAATTTGAAAAATTATATGAAAAGTATGAAGAAGAAAATTTAGGAAAAAAAAC 42698 Query 75859 TGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 |||| ||| ||| | ||| |||||| | || |||| || || || ||| Sbjct 42699 TGTATTAGCTCAAGATTTATGGTTTGCTATTTTACAAAGTCAGATTGAAACAGGTGTACC 42758 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 ||| ||| | ||||| ||| | ||||| || ||| ||||| ||||| || ||||| Sbjct 42759 ATACATGTTGTACAAAGATTCATGTAATGCTAAATCTAATCAAAAAAATTTAGGTACAAT 42818 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 || | ||||| ||| ||||| |||| || ||| ||||| ||||| Sbjct 42819 TAAATGTAGTAATCTATGCTGTGAAATAATAGAATATACATCACCAGATGAAGTTGCTGT 42878 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 ||| || || ||||| || || | || | ||| | ||| | |||| | Sbjct 42879 TTGTAACTTAGCATCTATTGCTTTATGTAAATTTGTAGACACAGAAAAAAAAGTTTTTAA 42938 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || | ||||| | ||||||| ||||| ||| |||| | |||| || || | | ||||| Sbjct 42939 TTTTAAAAAATTATATGAAATTACAAAAATTATTACGAGAAATTTAGACAAAATTATTGA 42998 Query 76159 CAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGCGACACAGACCTATTG 76217 ||||||| |||||| ||| || || || || || || | | |||| ||||| || | Sbjct 42999 AAGAAATTATTATCCTGTTAAGGAAGCT-GAGAGATCAAACAGGAGACATAGACCAATAG 43057 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAG 76277 | | ||||| ||||| | || || |||||| | | | || | | || |||| Sbjct 43058 GAATTGGTGTACAAGGATTAGCTGACACATTTATGCTTTTAAGATATCCTTACGAATCAG 43117 Query 76278 ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGG 76337 ||||||| || || | ||| | || |||||||| ||||| | || | | || Sbjct 43118 ATGAAGCAAAAGAATTAAATAAAAGAATTTTTGAAACTATGTACTATGCTGCATTAGAAA 43177 Query 76338 CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGT 76397 | | ||||| ||| || | || ||||| | | ||| ||| ||| || Sbjct 43178 TGTCTATGGAATTAGCTAAAATTTATGGGAAATATGAATCTTATGAAGGTAGTCCAGCTA 43237 Query 76398 CCCAAGGGGTGCTTCAGTTTGATATGTGG------GAAGGTGAAACCAAGCTCAACTACG 76451 |||||| | |||||||||||||||||| ||| ||| | ||| ||| Sbjct 43238 GCCAAGGTATTCTTCAGTTTGATATGTGGAATATCAAAGTTGATAACAA---ATACTGGA 43294 Query 76452 ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGAT 76509 | ||| ||| || || ||| || || | | || || | | | || || | | Sbjct 43295 ATTGGAATGAACTTAAAGAAAAAATTAAAAAACATGGACTAAGGA--ATTCCTTACTTTT 43352 Query 76510 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 76569 ||||| ||||| || || || || ||||||| || || || ||||||| |||||||| Sbjct 43353 AGCACCTATGCCTACTGCATCTACTTCACAAATATTAGGAAACAATGAATCTTTTGAACC 43412 Query 76570 ATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626 |||||| | || || ||| |||||| ||| || || || || ||||||| Sbjct 43413 ATACACTAGCAATATTTACTACAGAAGAGTACTCAGTGGAGAATTCTTCGTTGTCAA 43469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596543619393920