Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq187 300 3e-76 seq176 197 3e-45 >seq187 Length=410067 Score = 300 bits (332), Expect = 3e-76 Identities = 557/809 (69%), Gaps = 38/809 (5%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| || || ||||||| ||| ||| ||| |||||||| | | | || |||||| Sbjct 75390 CTTGTAGAGAAATTAAATCCATCCAATTAAAAGGATTTTTTGCAAAAAAA-ATTTTTGAA 75332 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| |||||||| ||| ||||||||||||| ||| || ||||||||| Sbjct 75331 CAACCTAAACATTCTAATAATCGATCTGCTACAAATTCAATATACTGAGACATTAATCTT 75272 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | |||| | ||| || || |||| | ||| Sbjct 75271 GAATTCATCCCAATTAAGTCACAAGGTAGAGATTCACATATGAAAGACCTTTCAACTTCA 75212 Query 49752 acagcttgtttaattatcataattatatta---ttttttgataatttatatt-taatatg 49807 ||||||| || ||| ||| || || | | || || || ||||| || ||||| Sbjct 75211 ACAGCTTCTT---TTACAATATTTTTAACAACTTCTTCTGGTAGTTTATTTTCTAATAAA 75155 Query 49808 attcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTC 49867 | |||||||| ||| |||||| |||||||| || || || ||| || | ||| Sbjct 75154 CT----ATATATTAGACAGTTAAAATCTGTATGTAATCCTTCATCTCTACTAATTAGTTC 75099 Query 49868 ATTACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA 49926 ||| ||||| || | ||| || ||| | | | ||||||| |||||| || | | Sbjct 75098 ATTGCTAAAGGTAAGTCCATGTAATTTGTTTTGT-TTTTTAAACCAAAAAATAGCACAGA 75040 Query 49927 AACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACA 49986 |||||| | ||| | |||||| || ||||| ||| ||||| |||||| || ||| | Sbjct 75039 AACTACCACTAAACAGTATACCTTCAACACATGCATTTGCTACAATTCTTTCTGCAA--A 74982 Query 49987 TTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTA 50046 | ||||| | ||| |||||| ||| |||||| |||||| || || | | |||| Sbjct 74981 TGAATTTGT-ATCATTTATCCATTTTGCTGCCCAAAGTGCTTTATTCTTAACTGCTGGTA 74923 Query 50047 TATTTTCTATAGCTTTAAAT-AATTCA-----tttttttCATNNNNNNNNNNNNNNNNNN 50100 ||||||| ||||| | |||| |||| | | |||||||| Sbjct 74922 TATTTTCAATAGCATGAAATAAATTTAAACGTTCTTTTTCAT------CTTTTATATAAT 74869 Query 50101 NNNNNATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAAT 50160 || | |||| ||| |||| ||||||| | ||||| |||||||||||||| | Sbjct 74868 TGTCTATAAGTAAACTATATGTTTCTGAATGTATATTTTCCACTGCTATTTGAAATGAGT 74809 Query 50161 AAAATTGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACT----AAATTC 50216 |||||| | | ||||||| | ||||| || || ||| || ||| ||||| Sbjct 74808 AAAATTTTTTAGCTTCTGTAATTTGAACCTCTCTTAAAAAT--TT--ACTGGCCAAATTT 74753 Query 50217 TCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTT 50276 || |||| ||||||||| ||||| || |||||||| || | |||||||||||| ||| Sbjct 74752 TCTAATACTATACCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGCTTT 74693 Query 50277 TCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATT 50336 ||||| || ||||| ||||| || || | ||| |||||||||||| |||||| | Sbjct 74692 TCATTCTCATTTAATTTTTCAAAATCTTTTAAATCACTTGATAAATCTATTTCTTCAGCT 74633 Query 50337 GTCCAAAATGATGCTACGGATTTTTTATA 50365 ||||||||||||||| | | ||||||||| Sbjct 74632 GTCCAAAATGATGCTTCTGCTTTTTTATA 74604 >seq176 Length=118070 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | ||||| ||||| |||||||||| ||||| ||| |||||||| || Sbjct 109438 ACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATCCGA 109379 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| | |||| || |||||||| || ||||| |||||||| |||||||| ||||| Sbjct 109378 TAATGTTCTTCCATCCTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGG 109319 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| |||||||| ||||| |||||||| || | ||||| |||||||| Sbjct 109318 AATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATGGTGTCTGATGATTCTAC 109259 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || ||||| || || || || ||||| | ||||||||||||| Sbjct 109258 ATCGAGCGTGATGGTCTTTCCCGTCAAGGTTTTCACAAATATCTGCATT 109210 Score = 188 bits (208), Expect = 1e-42 Identities = 181/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||| ||||| | ||||| ||||| |||||||||| ||||| ||| |||||||| Sbjct 109903 AAAACCTCCTCTTAATCGTAAGACTAAGTGTAAAGTAGATTCTTTCTGGATGTTATAATC 109844 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||||||| | |||| || |||||||| || || || |||||||| || ||||| || Sbjct 109843 CGATAATGTTCTTCCATCCTCTAATTGTTTTCCTGCGAATATTAATCTTTGCTGATCGGG 109784 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| |||||||| ||||| |||||||| |||| ||| || ||||| Sbjct 109783 TGGAATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATAGTATCCGATGATTC 109724 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| |||| || ||||| || || || || ||||| | |||||||||||| Sbjct 109723 TACATCTAAGGTGATGGTCTTTCCTGTCAAGGTTTTCACGAATATCTGCATT 109672 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||||| ||||| || | |||| |||||| ||| |||||||| ||| Sbjct 109668 CCTCCTCTTAATCGTAACACTAAGTGCAGGGTAGACTCTTTCTGGATGTTATAATCCGAT 109609 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||||| | |||| ||||||||||| || ||||| |||||||| |||||||| ||||| Sbjct 109608 AATGTTCTTCCATCTTCCAATTGTTTTCCTGCAAATATTAATCTTTGTTGATCGGGTGGA 109549 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| ||||| |||||||| || | ||| || || || || Sbjct 109548 ATTCCTTCCTTATCTTGAATTTTCGCCTTTACATTCTCAATCGTATCCGAGGACTCAACA 109489 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || ||||| || || ||||| ||||| | |||||||||||| Sbjct 109488 TCCAAGGTGATGGTCTTTCCTGTTAAGGTTTTCACGAATATCTGCATT 109441 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | ||||| ||||||||||| |||| || || ||| |||||||| | Sbjct 109207 ACCTCCTCTTAATCGTAAGACTAAATGTAAGGTAGATTCCTTTTGGATGTTATAATCCAA 109148 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| |||| |||||||| || || ||||| || ||||| || ||||||||||| Sbjct 109147 TAATGTTCTGCCATCTTCCAATTGCTTTCCCGCAAATATCAATCTTTGCTGATCAGGTGG 109088 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||| ||||| || ||||| |||||||| || | ||| || || || || Sbjct 109087 TATTCCTTCCTTATCCTGAATTTTCGCCTTTACATTCTCAATCGTATCCGATGACTCAAC 109028 Query 192489 TTCTAGAGTAATGGTTTTACC 192509 || | || || |||||||| Sbjct 109027 ATCCAAGGTGATCGTTTTACC 109007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984436054043400